Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 5
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0061g00770.t01 | Wine grape | plastid | 79.14 | 66.15 |
| KRH30554 | Soybean | nucleus, plastid | 76.69 | 63.13 |
| KRH25112 | Soybean | plastid | 76.07 | 62.94 |
| Bra037609.1-P | Field mustard | plastid | 74.85 | 62.24 |
| CDY20339 | Canola | plastid | 74.85 | 62.24 |
| Solyc11g066410.1.1 | Tomato | plastid | 73.01 | 61.98 |
| CDY29728 | Canola | plastid | 74.23 | 61.73 |
| PGSC0003DMT400001214 | Potato | plastid | 72.39 | 61.46 |
| AT3G44890.1 | Thale cress | plastid | 73.01 | 60.41 |
| Os02t0822600-01 | Rice | plastid | 68.1 | 59.36 |
| TraesCS6B01G450500.1 | Wheat | plastid | 67.48 | 57.59 |
| TraesCS6D01G390000.1 | Wheat | plastid | 67.48 | 55.84 |
| EES07707 | Sorghum | plastid | 65.03 | 54.64 |
| TraesCS6A01G406500.1 | Wheat | plastid | 65.03 | 52.74 |
| HORVU6Hr1G093030.1 | Barley | plastid | 66.87 | 50.7 |
| Zm00001d018412_P001 | Maize | plastid | 18.4 | 32.97 |
Protein Annotations
| MapMan:17.7.2.1.7 | Gene3D:3.10.430.100 | Gene3D:3.40.5.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009570 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr9G23590_001 | EnsemblPlants:GSMUA_Achr9P23590_001 |
| EnsemblPlants:GSMUA_Achr9T23590_001 | InterPro:IPR036791 | InterPro:IPR036935 | UniProt:M0U2W6 | HAMAP:MF_00503 | PFAM:PF01281 |
| PFAM:PF03948 | ScanProsite:PS00651 | PANTHER:PTHR21368 | PANTHER:PTHR21368:SF18 | InterPro:Ribosomal_L9 | InterPro:Ribosomal_L9/RNase_H1_N |
| InterPro:Ribosomal_L9_C | InterPro:Ribosomal_L9_C_sf | InterPro:Ribosomal_L9_N | InterPro:Ribosomal_L9_N_sf | InterPro:Ribosomal_L9_bac/chp | SUPFAM:SSF55653 |
| SUPFAM:SSF55658 | TIGRFAMs:TIGR00158 | UniParc:UPI000294D2AE | SEG:seg | : | : |
Description
50S ribosomal protein L9, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G23590_001]
Coordinates
chr9:-:28433502..28438225
Molecular Weight (calculated)
18426.8 Da
IEP (calculated)
9.340
GRAVY (calculated)
-0.082
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMEKGANAV YLLCVIFIIL KEDVTELGKK GDLLDVKAGY YRNFLLPTGR AQLVTPLLLK EMRIEEERIE AEKQRVKEEA QQLALIFQTV GAFKVKRKGG
101: KGKQIFGTVT AQDLVDIIKA QLNRDVDKRI VTLPEIRETG EYIAELKLHP EVSAVVRLNV YAN
101: KGKQIFGTVT AQDLVDIIKA QLNRDVDKRI VTLPEIRETG EYIAELKLHP EVSAVVRLNV YAN
001: MASSTALSLS WSSSPCWSHS FNGGANETLK VSERRFNFEV VSQKKAKKLR KVILKEDVTD LGKQGQLLDV KAGFFRNFLL PTGKAQLMTP LLLKELKMED
101: ERIEAEKQRV KEEAQQLAMV FQTVGAFKVK RKGGKGKLIF GSVTAQDLVD IIKSQLQKDI DKRLVSLPEI RETGEYIAEL KLHPDVTARV KINVFAN
101: ERIEAEKQRV KEEAQQLAMV FQTVGAFKVK RKGGKGKLIF GSVTAQDLVD IIKSQLQKDI DKRLVSLPEI RETGEYIAEL KLHPDVTARV KINVFAN
Arabidopsis Description
RPL9RPL9 [Source:UniProtKB/TrEMBL;Acc:A0A178VBQ7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.