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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 4
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH09717 Soybean nucleus 99.58 99.58
VIT_09s0002g07070.t01 Wine grape cytosol 95.93 96.38
AT1G80070.1 Thale cress cytosol 94.06 94.02
PGSC0003DMT400073947 Potato cytosol 94.83 93.6
HORVU5Hr1G058160.6 Barley cytosol 91.52 93.02
TraesCS5A01G189600.1 Wheat unclear 92.11 92.07
TraesCS5B01G193600.1 Wheat golgi 92.03 92.03
TraesCS5D01G201300.1 Wheat cytosol 91.98 91.98
OQU75900 Sorghum cytosol 92.07 91.87
Zm00001d045199_P004 Maize cytosol 92.07 91.87
HORVU7Hr1G027000.2 Barley cytosol 91.52 91.79
Zm00001d036301_P007 Maize plastid 91.98 91.67
TraesCS7A01G129700.1 Wheat nucleus 91.82 91.66
TraesCS7D01G128800.1 Wheat cytosol, plastid 91.77 91.62
Os06t0167000-02 Rice cytosol, nucleus, plastid 43.89 91.59
TraesCS7B01G029700.1 Wheat plastid 91.82 91.54
AT4G38780.1 Thale cress cytosol 89.19 90.18
GSMUA_AchrUn_... Banana nucleus 16.41 89.17
CDY65286 Canola nucleus 6.87 85.71
Os05t0163250-01 Rice cytosol 20.02 84.59
CDY66547 Canola cytosol 13.02 81.65
Solyc06g043160.1.1 Tomato cytosol 1.61 73.08
TraesCS3D01G428800.1 Wheat cytosol, mitochondrion 2.67 57.8
TraesCS1B01G416400.1 Wheat mitochondrion 2.5 55.14
TraesCS1B01G415700.1 Wheat mitochondrion 2.67 54.31
TraesCS1B01G368800.1 Wheat mitochondrion 2.5 54.13
Bra003548.1-P Field mustard cytosol 1.19 52.83
HORVU7Hr1G051980.3 Barley cytosol, mitochondrion, nucleus 2.67 40.65
Protein Annotations
Gene3D:1.20.58.1750Gene3D:1.20.80.40EntrezGene:100804026MapMan:16.4.1.4.4Gene3D:3.30.420.230Gene3D:3.40.140.10
Gene3D:3.90.1570.40EMBL:ACUP02008474ncoils:CoilEnsemblPlantsGene:GLYMA_13G366100GO:GO:0000244GO:GO:0000386
GO:GO:0000398GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005681
GO:GO:0005682GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016043
GO:GO:0017070GO:GO:0030619GO:GO:0030620GO:GO:0030623GO:GO:0071013GO:GO:0097157
UniProt:I1M5U8InterPro:IPR037518InterPro:JAMM/MPN+_domEnsemblPlants:KRH23587ProteinID:KRH23587ProteinID:KRH23587.1
InterPro:MPNPFAM:PD149576PFAM:PF01398PFAM:PF08082PFAM:PF08083PFAM:PF08084
PFAM:PF10596PFAM:PF10597PFAM:PF10598PFAM:PF12134InterPro:PRO8NTInterPro:PROCN
InterPro:PROCTInterPro:PRP8InterPro:PRP8_domainIVPFscan:PS50249PANTHER:PTHR11140InterPro:Prp8_U5-snRNA-bd
InterPro:Prp8_U6-snRNA-bdInterPro:RNaseH-like_sfInterPro:RRM_spliceosomal_PrP8SMART:SM00232SUPFAM:SSF53098UniParc:UPI000233B383
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr13:-:45198080..45209642
Molecular Weight (calculated)
275842.0 Da
IEP (calculated)
8.971
GRAVY (calculated)
-0.471
Length
2358 amino acids
Sequence
(BLAST)
0001: MWNNGQILPP GTSVPPIPPP PAAQPSYTVL PPPPPTPVPM ETEADAEARL EEKARKWQQL NSKRYSDKRK FGFVETQKED MPPEHVRKII RDHGDMSSKK
0101: YRHDKRVYLG ALKFIPHAVY KLLENMPMPW EQVRDVRVLY HISGAITFVN EIPWVVEPIY LAQWGTMWIM MRREKRDRRH FKRMRFPPFD DEEPPLDYAD
0201: NLLDVDPLEP IQLELDEEED SAVYTWFYDH KPLVKTKLIN GPSYRKWHLS LPIMATLHRL AGQLLSDLID RNYFYLFDME SFFTAKALNM CIPGGPKFEP
0301: LYRDMEKGDE DWNEFNDINK LIIRSPLRTE YRIAFPHLYN NRPRKVKLCV YHTPMIMFIK AEDPDLPAFY YDPLIHPITS ANKERREKRV YEDDDDDDWI
0401: LPDGVEPLLK DTQLYTDTTA AGISLLFAPR PFNMRSGRMR RAEDIPLVSE WYKEHCPPSY PVKVRVSYQK LLKCFVLNEL HHRPPKAQKK KHLFRSLQAT
0501: KFFQTTELDW VEAGLQVCRQ GYNMLNLLIH RKNLNYLHLD YNFNLKPVKT LTTKERKKSR FGNAFHLCRE ILRLTKLVVD ANVQFRLGNV DAFQLADGLQ
0601: YTFSHVGQLT GMYRYKYRLM RQIRMCKDLK HLIYYRFNTG PVGKGPGCGF WAPMWRVWLF FLRGIVPLLE RWLGNLLARQ FEGRHSKGVA KTVTKQRVES
0701: HFDLELRAAV MHDVLDAMPE GIKQNKARTI LQHLSEAWRC WKANIPWKVP GLPVPIENMI LRYVKSKADW WTNVAHYNRE RIRRGATVDK TVCRKNLGRL
0801: TRLWLKAEQE RQHNYLKDGP YVTPEEAVAI YTTTVHWLES RKFSPIPFPP LSYKHDTKLL ILALERLKES YSVAVRLNQL QREELGLIEQ AYDNPHEALS
0901: RIKRHLLTQR AFKEVGIEFM DLYSYLIPVY EIEPLEKITD AYLDQYLWYE GDKRHLFPNW IKPADSEPPP LLVYKWCQGI NNLQSIWDTS EGQCVVMLQT
1001: KFEKFFEKID LTMLNRLLRL VLDHNIADYV TAKNNVVLSY KDMSHTNSYG LIRGLQFASF VVQYYGLVLD LLLLGLTRAS EIAGPPQMPN EFITYWDTKV
1101: ETKHPIRLYS RYIDRVHILF RFTHEEARDL IQRYLTEHPD PNNENMVGYN NKKCWPRDAR MRLMKHDVNL GRSVFWDMKN RLPRSITTLE WENSFVSVYS
1201: KDNPNLLFSM CGFEVRILPK IRMTQEAFSN TRDGVWNLQN EQTKERTAVA FLRVDDEHMK VFENRVRQIL MSSGSTTFTK IVNKWNTALI GLMTYFREAT
1301: VHTQELLDLL VKCENKIQTR IKIGLNSKMP SRFPPVIFYT PKEIGGLGML SMGHILIPQS DLRYSQQTDV GVTHFRSGMS HEEDQLIPNL YRYIQPWESE
1401: FIDSQRVWAE YALKRQEAQA QNRRLTLEDL EDSWDRGIPR INTLFQKDRH TLAYDKGWRV RTDFKQYQVL KQNPFWWTHQ RHDGKLWNLN NYRTDVIQAL
1501: GGVEGILEHT LFKGTYFPTW EGLFWEKASG FEESMKYKKL TNAQRSGLNQ IPNRRFTLWW SPTINRANVY VGFQVQLDLT GIFMHGKIPT LKISLIQIFR
1601: AHLWQKIHES VVMDLCQVLD QELDALEIET VQKETIHPRK SYKMNSSCAD ILLFAAHRWP MSKPSLVAES KDVFDQKASN KYWIDVQLRW GDYDSHDIER
1701: YTRAKFMDYT TDNMSIYPSP TGVMIGLDLA YNLHSAFGNW FPGSKPLLQQ AMNKIMKSNP ALYVLRERIR KGLQLYSSEP TEPYLSSQNY GEIFSNQIIW
1801: FVDDTNVYRV TIHKTFEGNL TTKPINGAIF IFNPRTGQLF LKVIHTSVWA GQKRLGQLAK WKTAEEVAAL VRSLPVEEQP KQIIVTRKGM LDPLEVHLLD
1901: FPNIVIKGSE LQLPFQACLK IEKFGDLILK ATEPQMVLFN IYDDWLKSIS SYTAFSRLIL ILRALHVNNE KAKMLLKPDK TIITEPHHIW PSLSDDQWMK
2001: VEVALRDLIL SDYAKKNNVN TSALTQSEIR DIILGAEITP PSQQRQQIAE IEKQAHEANQ VTAVTTKTTN VHGEELIVTT TSPYEQAAFG SKTDWRVRAI
2101: SATNLYLRVN HIYVNSEDIK ETGYTYIMPK NILKKFICVA DLRTQISGYM YGISPPDNPQ VKEIRCIVMP PQWGTHQQVH LPSALPEHDF LNDLEPLGWM
2201: HTQPNELPQL SPQDLTSHAK ILENNKQWDG EKCIILTCSF TPGSCSLTAY KLTPSGYEWG RVNKDTGSNP HGYLPTHYEK VQMLLSDRFL GFYMVPDNGP
2301: WNYNFMGVRH ASGMKYGVKL GTPREYYHED HRPTHFLEFS NMEEVEITAE GDREDTFS
Best Arabidopsis Sequence Match ( AT1G80070.1 )
(BLAST)
0001: MWNNNDGMPL APPGTGGSMM PPPPAAHPSY TALPPPSNPT PPVEPTPEEA EAKLEEKARK WMQLNSKRYG DKRKFGFVET QKEDMPPEHV RKIIRDHGDM
0101: SSKKFRHDKR VYLGALKFVP HAVFKLLENM PMPWEQVRDV KVLYHITGAI TFVNEIPWVV EPIYMAQWGT MWIMMRREKR DRRHFKRMRF PPFDDEEPPL
0201: DYADNLLDVD PLEPIQLELD EEEDSAVHTW FYDHKPLVKT KLINGPSYRR WNLSLPIMAT LHRLAGQLLS DLIDRNYFYL FDMPSFFTAK ALNMCIPGGP
0301: KFEPLYRDME KGDEDWNEFN DINKLIIRSP LRTEYRIAFP HLYNNRPRKV KLCVYHSPMI MYIKTEDPDL PAFYYDPLIH PISNTNKEKR ERKVYDDEDD
0401: FALPEGVEPL LRDTQLYTDT TAAGISLLFA PRPFNMRSGR TRRAEDIPLV SEWFKEHCPP AYPVKVRVSY QKLLKCYVLN ELHHRPPKAQ KKKHLFRSLA
0501: ATKFFQSTEL DWVEVGLQVC RQGYNMLNLL IHRKNLNYLH LDYNFNLKPV KTLTTKERKK SRFGNAFHLC REILRLTKLV VDANVQFRLG NVDAFQLADG
0601: LQYIFSHVGQ LTGMYRYKYR LMRQIRMCKD LKHLIYYRFN TGPVGKGPGC GFWAPMWRVW LFFLRGIVPL LERWLGNLLA RQFEGRHSKG VAKTVTKQRV
0701: ESHFDLELRA AVMHDVLDAM PEGIKQNKAR TILQHLSEAW RCWKANIPWK VPGLPVPIEN MILRYVKSKA DWWTNVAHYN RERIRRGATV DKTVCRKNLG
0801: RLTRLWLKAE QERQHNYLKD GPYVTPEEAL AIYTTTVHWL ESRKFSPIPF PPLSYKHDTK LLILALERLK ESYSVAVRLN QQQREELGLI EQAYDNPHEA
0901: LSRIKRHLLT QRGFKEVGIE FMDLYSYLIP VYEIEPLEKI TDAYLDQYLW YEGDKRHLFP NWIKPADSEP PPLLVYKWCQ GINNLQGIWD TGDGQCVVML
1001: QTKFEKFFEK IDLTMLNRLL RLVLDHNIAD YVSAKNNVVL SYKDMSHTNS YGLIRGLQFA SFVVQFYGLL LDLLLLGLTR ASEIAGPPQM PNEFMTFWDT
1101: KVETRHPIRL YSRYIDKVHI MFKFTHEEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWDM KNRLPRSITT LEWENGFVSV
1201: YSKDNPNLLF SMCGFEVRIL PKIRMTQEAF SNTKDGVWNL QNEQTKERTA VAFLRVDDEH MKVFENRVRQ ILMSSGSTTF TKIVNKWNTA LIGLMTYFRE
1301: ATVHTQELLD LLVKCENKIQ TRIKIGLNSK MPSRFPPVIF YTPKEIGGLG MLSMGHILIP QSDLRYSKQT DVGVTHFRSG MSHEEDQLIP NLYRYIQPWE
1401: SEFIDSQRVW AEYALKRQEA QAQNRRLTLE DLEDSWDRGI PRINTLFQKD RHTLAYDKGW RVRTDFKQYQ VLKQNPFWWT HQRHDGKLWN LNNYRTDVIQ
1501: ALGGVEGILE HTLFKGTYFP TWEGLFWEKA SGFEESMKYK KLTNAQRSGL NQIPNRRFTL WWSPTINRAN VYVGFQVQLD LTGIFMHGKI PTLKISLIQI
1601: FRAHLWQKIH ESVVMDLCQV LDQELDALEI ETVQKETIHP RKSYKMNSSC ADVLLFAAHK WPMSKPSLVA ESKDMFDQKA SNKYWIDVQL RWGDYDSHDI
1701: ERYTRAKFMD YTTDNMSIYP SPTGVMIGLD LAYNLHSAFG NWFPGSKPLL AQAMNKIMKS NPALYVLRER IRKGLQLYSS EPTEPYLSSQ NYGEIFSNQI
1801: IWFVDDTNVY RVTIHKTFEG NLTTKPINGA IFIFNPRTGQ LFLKVIHTSV WAGQKRLGQL AKWKTAEEVA ALVRSLPVEE QPKQIIVTRK GMLDPLEVHL
1901: LDFPNIVIKG SELQLPFQAC LKIEKFGDLI LKATEPQMVL FNIYDDWLKS ISSYTAFSRL ILILRALHVN NEKAKMLLKP DKSVVTEPHH IWPSLTDDQW
2001: MKVEVALRDL ILSDYAKKNN VNTSALTQSE IRDIILGAEI TPPSQQRQQI AEIEKQAKEA SQLTAVTTRT TNVHGDELIV TTTSPYEQSA FGSKTDWRVR
2101: AISATNLYLR VNHIYVNSDD IKETGYTYIM PKNILKKFIC VADLRTQIAG YLYGISPPDN PQVKEIRCVV MVPQWGNHQL VHLPSSLPEH DFLNDLEPLG
2201: WLHTQPNELP QLSPQDVTSH SRILENNKQW DGEKCIILTC SFTPGSCSLT SYKLTQTGYE WGRLNKDNGS NPHGYLPTHY EKVQMLLSDR FLGFYMVPES
2301: GPWNYSFTGV KHTLSMKYSV KLGSPKEFYH EEHRPTHFLE FSNMEEADIT EGDREDTFT
Arabidopsis Description
PRP8ASUS2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7J7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.