Factsheet for TraesCS5A01G189600.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G201300.1	Wheat	cytosol	99.49	99.53
TraesCS5B01G193600.1	Wheat	golgi	99.36	99.41
HORVU5Hr1G058160.6	Barley	cytosol	97.58	99.22
Os06t0167000-02	Rice	cytosol, nucleus, plastid	47.01	98.14
TraesCS7A01G129700.1	Wheat	nucleus	98.13	98.01
Zm00001d045199_P004	Maize	cytosol	96.69	96.53
OQU75900	Sorghum	cytosol	96.69	96.53
Zm00001d036301_P007	Maize	plastid	96.4	96.11
VIT_09s0002g07070.t01	Wine grape	cytosol	92.58	93.06
KRH09717	Soybean	nucleus	92.12	92.15
KRH23587	Soybean	nucleus	92.07	92.11
AT1G80070.1	Thale cress	cytosol	91.35	91.35
Solyc07g008880.2.1	Tomato	plastid	92.07	91.11
PGSC0003DMT400073947	Potato	cytosol	91.95	90.79
Os05t0163250-01	Rice	cytosol	21.36	90.32
GSMUA_AchrUn_...	Banana	nucleus	16.41	89.17
AT4G38780.1	Thale cress	cytosol	86.82	87.82
Solyc06g043160.1.1	Tomato	cytosol	1.61	73.08
CDY57684	Canola	cytosol	1.06	47.17
Bra003548.1-P	Field mustard	cytosol	1.06	47.17

Protein Annotations

Gene3D:1.20.58.1750	Gene3D:1.20.80.40	MapMan:16.4.1.4.4	Gene3D:3.30.420.230	Gene3D:3.40.140.10	Gene3D:3.90.1570.40
ncoils:Coil	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0017070	GO:GO:0030623
InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN	PFAM:PD149576	PFAM:PF01398	PFAM:PF08082
PFAM:PF08083	PFAM:PF08084	PFAM:PF10596	PFAM:PF10597	PFAM:PF10598	PFAM:PF12134
InterPro:PRO8NT	InterPro:PROCN	InterPro:PROCT	InterPro:PRP8	InterPro:PRP8_domainIV	PFscan:PS50249
PANTHER:PTHR11140	InterPro:Prp8_U5-snRNA-bd	InterPro:Prp8_U6-snRNA-bd	InterPro:RNaseH-like_sf	InterPro:RRM_spliceosomal_PrP8	SMART:SM00232
SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS5A01G189600	EnsemblPlants:TraesCS5A01G189600.1	TIGR:cd08056	TIGR:cd13838	SEG:seg

Description

No Description!

Coordinates

chr5A:+:392574847..392585447

Molecular Weight (calculated)

275055.0 Da

IEP (calculated)

9.062

GRAVY (calculated)

-0.470

Length

2359 amino acids

Sequence
(BLAST)

0001: MWNGAPPPPP PMAAAPPPPG TVGAVPVPPP QAAAPPQAGQ PLTPAELEAQ LVEKARKWHQ LNSKRYGDKR KFGFVEAQKE DMPPEHVRKI IRDHGDMSSK
0101: KYRHDKRVYL GALKFVPHAV YKLLENMPMP WEQVRDVKIL YHITGAITFV NEIPWVVEPI YLAQWGSMWI MMRREKRDRR HFKRMRFPPF DDEEPPLDYA
0201: DNLLDVEPLE AIQLELDPEE DGAVYKWFYD HKPLVKTKLI NGPSYRKWHL SLPIMATLYR LAGQLLSDLI DRNYFYLFDM ESFFTAKALN MCIPGGPKFE
0301: PLYRDMEKGD EDWNEFNDIN KLIIRQPLRT EYRIAFPHLY NNRPRKVRLC IYHTPMIMYI KTEDPDLPAF YYDPLINPIT STSKIDHREK KASEDEDEDD
0401: FSLPDGVDPL LKETPLYTDT TAAGISLLFA PKPFNMRSGR TRRAEDIPLV SEWFKEHCPP AYPVKVRVSY QKLLKCYVLN ELHHRPPKAQ KKKHLFRSLQ
0501: ATKFFQTTEL DWAEAGLQVC KQGYNMLNLL IHRKNLNYLH LDYNFNLKPV KTLTTKERKK SRFGNAFHLC REILRLTKLV VDANIQFRLG NVDAFQLADG
0601: LQYIFSHVGQ LTGMYRYKYR LMRQIRMCKD LKHLIYYRFN TGPVGKGPGC GFWAPMWRVW LFFLRGIVPL LERWLGNLLA RQFEGRHSKG VAKTVTKQRV
0701: ESHFDLELRA AVMHDVLDAM PEGIKQNKAR TILQHLSEAW RCWKANIPWK VPGLPVPIEN MILRYVKSKA DWWTNVAHYN RERIRRGATV DKTVCRKNLG
0801: RLTRLWLKAE QERQHNYLKD GPYVTPEEAV AIYTTTVHWL ESRKFSPIPF PPLSYKHDTK LLILALERLK ESYSVAVRLN QLQREELGLI EQAYDNPHEA
0901: LSRIKRHLLT QRAFKEVGIE FMDLYSYLIP VYEIEPLEKI TDAYLDQYLW YEGDKRHLFP NWVKPADSEP PPLLVYKWCQ GINNLQDIWD TSDGQCVVML
1001: QTKFEKFFEK IDLTLLNRLL RLVLDHNIAD YVTAKNNVVL SYKDMSHTNS YGLIRGLQFA SFVVQYYGLV LDLLLLGLTR ASEIAGPPQM PNEFLTYTDT
1101: KVETRHPIRL YSRYIDKVHI MFRFTHEEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWDM KNRLPRSITT LEWENGFVSV
1201: YSKDNPNLLF SMSGFEVRIL PKIRMTQEAF SNTKDGVWNL QNEQTKERTA IAFLRVDDEH MKVFENRVRQ ILMSSGSTTF TKIVNKWNTA LIGLMTYFRE
1301: ATVHTQELLD LLVKCENKIQ TRIKIGLNSK MPSRFPPVIF YTPKEIGGLG MLSMGHILIP QSDLRYSKQT DVGVTHFRSG MSHEEDQLIP NLYRYIQPWE
1401: SEFIDSQRVW AEYALKRQEA QSQNRRLTLE DLEDSWDRGI PRINTLFQKD RHTLAYDKGW RVRTDFKQYQ VLKQNPFWWT HQRHDGKLWN LNNYRTDVIQ
1501: ALGGVEGILE HTLFKGTYFP TWEGLFWEKA SGFEESMKYK KLTNAQRSGL NQIPNRRFTL WWSPTINRAN VYVGFQVQLD LTGIFMHGKI PTLKISLIQI
1601: FRAHLWQKVH ESVVMDLCQV LDQELDALEI ETVQKETIHP RKSYKMNSSC ADVLLFAAHR WQMSKPSLVS ESKDVFDQKA SNKYWIDVQL RWGDYDSHDI
1701: ERYTRAKFMD YTTDNMSIYP SPTGVMIGLD LAYNLHSAFG NWFPGSKPLL QQAMNKIMKS NPALYVLRER IRKGLQLYSS EPTEPYLSSQ NYGEIFSNQI
1801: IWFVDDTNVY RVTIHKTFEG NLTTKPINGA IFIFNPRTGQ LFLKVIHTSV WAGQKRLGQL AKWKTAEEVA ALVRSLPVEE QPKQIIVTRK GMLDPLEVHL
1901: LDFPNIVIKG SELQLPFQAC LKIEKFGDLI LKATEPQMVL YNIYDDWLKS ISSYTAFSRL VLILRALHVN NEKAKMLLKP DKTIVTEPHH IWPSLTDEQW
2001: LKVECALRDL ILSDYAKKNN VNTSALTQSE IRDIILGAEI APPSQQRQQI AEIEKQSRET PQSNAVTTRT TNVHGDELII TTTSPYEQAA FASKTDWRVR
2101: AISATNLYLR VNHIYVNSDD IKETGYTYIM PKNILKKFIC IADLRTQVAG FLYGLSPQDN PQVKEIRCIS IPPQHGTHQM VTLPANLPEH EFLADLEPLG
2201: WMHTQPNEAP QLSPQDLTSH AKILENNKQW DGEKCIILTC SFTPGSCSLT AYKLTPSGYE WGRSNKDNGS NPHSYLPTHY EKVQMLLSDR FLGFYMVPDN
2301: APWNYNFMGV KHDPLMKYSM KLGTPRDFYH EDHRPTHFLE FSNIEEGEVA EGDREDTFS

Best Arabidopsis Sequence Match ( AT1G80070.1 )
(BLAST)

0001: MWNNNDGMPL APPGTGGSMM PPPPAAHPSY TALPPPSNPT PPVEPTPEEA EAKLEEKARK WMQLNSKRYG DKRKFGFVET QKEDMPPEHV RKIIRDHGDM
0101: SSKKFRHDKR VYLGALKFVP HAVFKLLENM PMPWEQVRDV KVLYHITGAI TFVNEIPWVV EPIYMAQWGT MWIMMRREKR DRRHFKRMRF PPFDDEEPPL
0201: DYADNLLDVD PLEPIQLELD EEEDSAVHTW FYDHKPLVKT KLINGPSYRR WNLSLPIMAT LHRLAGQLLS DLIDRNYFYL FDMPSFFTAK ALNMCIPGGP
0301: KFEPLYRDME KGDEDWNEFN DINKLIIRSP LRTEYRIAFP HLYNNRPRKV KLCVYHSPMI MYIKTEDPDL PAFYYDPLIH PISNTNKEKR ERKVYDDEDD
0401: FALPEGVEPL LRDTQLYTDT TAAGISLLFA PRPFNMRSGR TRRAEDIPLV SEWFKEHCPP AYPVKVRVSY QKLLKCYVLN ELHHRPPKAQ KKKHLFRSLA
0501: ATKFFQSTEL DWVEVGLQVC RQGYNMLNLL IHRKNLNYLH LDYNFNLKPV KTLTTKERKK SRFGNAFHLC REILRLTKLV VDANVQFRLG NVDAFQLADG
0601: LQYIFSHVGQ LTGMYRYKYR LMRQIRMCKD LKHLIYYRFN TGPVGKGPGC GFWAPMWRVW LFFLRGIVPL LERWLGNLLA RQFEGRHSKG VAKTVTKQRV
0701: ESHFDLELRA AVMHDVLDAM PEGIKQNKAR TILQHLSEAW RCWKANIPWK VPGLPVPIEN MILRYVKSKA DWWTNVAHYN RERIRRGATV DKTVCRKNLG
0801: RLTRLWLKAE QERQHNYLKD GPYVTPEEAL AIYTTTVHWL ESRKFSPIPF PPLSYKHDTK LLILALERLK ESYSVAVRLN QQQREELGLI EQAYDNPHEA
0901: LSRIKRHLLT QRGFKEVGIE FMDLYSYLIP VYEIEPLEKI TDAYLDQYLW YEGDKRHLFP NWIKPADSEP PPLLVYKWCQ GINNLQGIWD TGDGQCVVML
1001: QTKFEKFFEK IDLTMLNRLL RLVLDHNIAD YVSAKNNVVL SYKDMSHTNS YGLIRGLQFA SFVVQFYGLL LDLLLLGLTR ASEIAGPPQM PNEFMTFWDT
1101: KVETRHPIRL YSRYIDKVHI MFKFTHEEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWDM KNRLPRSITT LEWENGFVSV
1201: YSKDNPNLLF SMCGFEVRIL PKIRMTQEAF SNTKDGVWNL QNEQTKERTA VAFLRVDDEH MKVFENRVRQ ILMSSGSTTF TKIVNKWNTA LIGLMTYFRE
1301: ATVHTQELLD LLVKCENKIQ TRIKIGLNSK MPSRFPPVIF YTPKEIGGLG MLSMGHILIP QSDLRYSKQT DVGVTHFRSG MSHEEDQLIP NLYRYIQPWE
1401: SEFIDSQRVW AEYALKRQEA QAQNRRLTLE DLEDSWDRGI PRINTLFQKD RHTLAYDKGW RVRTDFKQYQ VLKQNPFWWT HQRHDGKLWN LNNYRTDVIQ
1501: ALGGVEGILE HTLFKGTYFP TWEGLFWEKA SGFEESMKYK KLTNAQRSGL NQIPNRRFTL WWSPTINRAN VYVGFQVQLD LTGIFMHGKI PTLKISLIQI
1601: FRAHLWQKIH ESVVMDLCQV LDQELDALEI ETVQKETIHP RKSYKMNSSC ADVLLFAAHK WPMSKPSLVA ESKDMFDQKA SNKYWIDVQL RWGDYDSHDI
1701: ERYTRAKFMD YTTDNMSIYP SPTGVMIGLD LAYNLHSAFG NWFPGSKPLL AQAMNKIMKS NPALYVLRER IRKGLQLYSS EPTEPYLSSQ NYGEIFSNQI
1801: IWFVDDTNVY RVTIHKTFEG NLTTKPINGA IFIFNPRTGQ LFLKVIHTSV WAGQKRLGQL AKWKTAEEVA ALVRSLPVEE QPKQIIVTRK GMLDPLEVHL
1901: LDFPNIVIKG SELQLPFQAC LKIEKFGDLI LKATEPQMVL FNIYDDWLKS ISSYTAFSRL ILILRALHVN NEKAKMLLKP DKSVVTEPHH IWPSLTDDQW
2001: MKVEVALRDL ILSDYAKKNN VNTSALTQSE IRDIILGAEI TPPSQQRQQI AEIEKQAKEA SQLTAVTTRT TNVHGDELIV TTTSPYEQSA FGSKTDWRVR
2101: AISATNLYLR VNHIYVNSDD IKETGYTYIM PKNILKKFIC VADLRTQIAG YLYGISPPDN PQVKEIRCVV MVPQWGNHQL VHLPSSLPEH DFLNDLEPLG
2201: WLHTQPNELP QLSPQDVTSH SRILENNKQW DGEKCIILTC SFTPGSCSLT SYKLTQTGYE WGRLNKDNGS NPHGYLPTHY EKVQMLLSDR FLGFYMVPES
2301: GPWNYSFTGV KHTLSMKYSV KLGSPKEFYH EEHRPTHFLE FSNMEEADIT EGDREDTFT

Arabidopsis Description

PRP8ASUS2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7J7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.