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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • cytosol 2
  • mitochondrion 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid, vacuole
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:vacuole
plastid: 23198870
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os06t0167000-02 Rice cytosol, nucleus, plastid 47.21 98.85
OQU75900 Sorghum cytosol 98.18 98.31
Zm00001d045199_P004 Maize cytosol 98.01 98.14
HORVU5Hr1G058160.6 Barley cytosol 95.65 97.54
TraesCS5A01G189600.1 Wheat unclear 96.11 96.4
TraesCS5D01G201300.1 Wheat cytosol 96.07 96.4
TraesCS5B01G193600.1 Wheat golgi 96.07 96.4
HORVU7Hr1G027000.2 Barley cytosol 95.39 96.0
TraesCS7A01G129700.1 Wheat nucleus 95.77 95.94
TraesCS7D01G128800.1 Wheat cytosol, plastid 95.65 95.81
TraesCS7B01G029700.1 Wheat plastid 95.65 95.69
VIT_09s0002g07070.t01 Wine grape cytosol 92.56 93.31
KRH09717 Soybean nucleus 91.8 92.11
KRH23587 Soybean nucleus 91.67 91.98
Os05t0163250-01 Rice cytosol 21.68 91.94
Solyc07g008880.2.1 Tomato plastid 91.63 90.94
PGSC0003DMT400073947 Potato cytosol 91.46 90.58
GSMUA_AchrUn_... Banana nucleus 16.36 89.17
Zm00001d008845_P001 Maize nucleus 11.71 78.25
Solyc06g043160.1.1 Tomato cytosol 1.61 73.08
Bra003548.1-P Field mustard cytosol 1.01 45.28
CDY57684 Canola cytosol 1.01 45.28
Protein Annotations
Gene3D:1.20.58.1750Gene3D:1.20.80.40EntrezGene:103629533MapMan:16.4.1.4.4Gene3D:3.30.420.230Gene3D:3.40.140.10
Gene3D:3.90.1570.40UniProt:A0A1D6LLK8ProteinID:AQK80590.1ncoils:CoilGO:GO:0000398GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005681GO:GO:0006139GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0017070GO:GO:0030623InterPro:IPR037518InterPro:JAMM/MPN+_domInterPro:MPN
PFAM:PD149576PFAM:PF01398PFAM:PF08082PFAM:PF08083PFAM:PF08084PFAM:PF10596
PFAM:PF10597PFAM:PF10598PFAM:PF12134InterPro:PRO8NTInterPro:PROCNInterPro:PROCT
InterPro:PRP8InterPro:PRP8_domainIVPFscan:PS50249PANTHER:PTHR11140InterPro:Prp8_U5-snRNA-bdInterPro:Prp8_U6-snRNA-bd
InterPro:RNaseH-like_sfInterPro:RRM_spliceosomal_PrP8SMART:SM00232SUPFAM:SSF53098UniParc:UPI000220CABEEnsemblPlantsGene:Zm00001d036301
EnsemblPlants:Zm00001d036301_P007EnsemblPlants:Zm00001d036301_T007SEG:seg:::
Description
Pre-mRNA-processing-splicing factor 8A
Coordinates
chr6:-:83171218..83187425
Molecular Weight (calculated)
276230.0 Da
IEP (calculated)
9.009
GRAVY (calculated)
-0.482
Length
2366 amino acids
Sequence
(BLAST)
0001: MWNGVPPPPP PPLQMAAAPP PPGTTVPGAG QPPPPPPPPA GASQGGKPLT PMELEAQLVE KARKWHQLNS KRYGDKRKFG FVEAQKEDMP PEHVRKITRD
0101: HGDMTSKKYR HDKRVYLGAL KFVPHAVYKL LENMPMPWEQ VRHVKILYHI TGAITFVNEI PWVVEPIYLA QWGTMWIMMR REKRDRRHFK RMRFPPFDDE
0201: EPPLDYADNL LDVEPLEAIQ LELDEEEDAA VYEWFYDHKP LMKTKLINGP SYRKWHLSLP IMATLYRLAG QLLSDLIDRN YFYLFDMESF FTAKALNMCI
0301: PGGPKFEPLY RDMEKGDEDW NEFNDINKLI IRQPLRTEYR IAFPHLYNNR PRKVKLGIYH TPMIMYIKTE DPDLPAFYYD PLINPITSTN KVDRRERKAA
0401: EEEDDEDFCL PEDVEPLLKQ TELYTDTTAA GISLLFAPKP FNMRSGRTRR AEDIPLVSEW YKEHCPPAYP VKVRVSYQKL LKCYVLNELH HRPPKAQKKK
0501: HLFRSLQATK FFQTTELDWA EAGLQVCKQG YNMLNLLIHR KNLNYLHLDY NFNLKPVKTL TTKERKKSRF GNAFHLCREI LRLTKLVVDA NIQFRLGNVD
0601: AFQLADGLQY IFSHVGQLTG MYRYKYRLMR QIRMCKDLKH LIYYRFNTGP VGKGPGCGFW APMWRVWLFF LRGIVPLLER WLGNLLARQF EGRHSKGVAK
0701: TVTKQRVESH FDLELRAAVM HDVLDAMPEG IKQNKARTIL QHLSEAWRCW KANIPWKVPG LPVPIENMIL RYVKSKADWW TNVAHYNRER IRRGATVDKT
0801: VCRKNLGRLT RLWLKAEQER QHNYLKDGPY VTPEEAVAIY TTTVHWLESR KFSPIPFPPL SYKHDTKLLI LALERLKESY SVAVRLNQLQ REELGLIEQA
0901: YDNPHEALSR IKRHLLTQRA FKEVGIEFMD LYSYLIPVYE IEPLEKITDA YLDQYLWYEG DKRHLFPNWV KPADSEPPPL LVYKWCQGIN NLLDIWDTSD
1001: GQCVVMLQTK FEKFFEKIDL TLLNRLLRLV LDHNIADYVT AKNNVVLSYK DMSHTNSYGL IRGLQFASFV VQYYGLVLDL LILGLTRASE IAGPPQMPNE
1101: FLTYADTKVE TRHPIRLYSR YIDKVHILFR FTHEEARDLI QRYLTEHPDP NNENMVGYNN KKCWPRDARM RLMKHDVNLG RSVFWDMKNR LPRSITTLEW
1201: ENNFVSVYSK DNPNLLFSMC GFEVRILPKI RMTQEAFSNT KDGVWNLQNE QTKERTAIAF LRVDDEHMKV FENRVRQILM SSGSTTFTKI VNKWNTALIG
1301: LMTYFREATV HTQELLDLLV KCENKIQTRI KIGLNSKMPS RFPPVIFYTP KEIGGLGMLS MGHILIPQSD LRYSKQTDVG VTHFRSGMSH EEDQLIPNLY
1401: RYIQPWESEF IDSQRVWAEY ALKRQEAQSQ NRRLTLEDLE DSWDRGIPRI NTLFQKDRHT LAYDKGWRVR TDFKQYQVLK QNPFWWTHQR HDGKLWNLNN
1501: YRTDVIQALG GVEGILEHTL FKGTYFPTWE GLFWEKASGF EESMKYKKLT NAQRSGLNQI PNRRFTLWWS PTINRANVYV GFQVQLDLTG IFMHGKIPTL
1601: KISLIQIFRA HLWQKIHESV VMDLCQVLDQ ELDALEIETV QKETIHPRKS YKMNSSCADI LLFAAHRWTM SKPSLVSESK DVFDQKASNK YWIDVQLRWG
1701: DYDSHDVERY TRAKFMDYTT DNMSIYPSPT GVMIGIDLAY NLHSAFGNWF PGSKPLLQQA MNKIMKSNPA LYVLRERIRK GLQLYSSEPT EPYLSSQNYG
1801: EIFSNQIIWF VDDTNVYRVT IHKTFEGNLT TKPINGAIFI FNPRTGQLFL KVIHTSVWAG QKRLGQLAKW KTAEEVAALV RSLPVEEQPK QIIVTRKGML
1901: DPLEVHLLDF PNIVIKGSEL QLPFQACLKI EKFGDLILKA TEPQMVLYNI YDDWLKSISS YTAFSRIVLI LRALHVNNEK AKMLLKPDKT IVTEPHHIWP
2001: TLNDEQWLKV ECALRDLILS DYAKKNNVNT SALTQSEMRD IILGAEIAPP SQQRQQIAEI EKQSRETTQL TAVTTRTTNV HGDELIITTT SPYEQQAFAS
2101: KTDWRVRAIS ATNLYLRVNH IYVNSDDIKE TGYTYIMPKN ILKKFICIAD LRTQIAGFLY GLSPQDNPQV KEIRCIAMPP QHGTHQMVTL PANLPEHEFL
2201: NDLEPLGWMH TQPNEAPQLS PQDLTSHAKI LENNKQWDGE KCIILTCSFT PGSCSLTAYK LTPSGYEWGR SNKDNGSNPH GYLPTHYEKV QMLLSDRFLG
2301: FYMVPDNAPW NFNFMGVKHD PQMKYNMKLG MPRDFYHEDH RPTHFLEFSN IEEGEAAEGD REDTFT
Best Arabidopsis Sequence Match ( AT1G80070.1 )
(BLAST)
0001: MWNNNDGMPL APPGTGGSMM PPPPAAHPSY TALPPPSNPT PPVEPTPEEA EAKLEEKARK WMQLNSKRYG DKRKFGFVET QKEDMPPEHV RKIIRDHGDM
0101: SSKKFRHDKR VYLGALKFVP HAVFKLLENM PMPWEQVRDV KVLYHITGAI TFVNEIPWVV EPIYMAQWGT MWIMMRREKR DRRHFKRMRF PPFDDEEPPL
0201: DYADNLLDVD PLEPIQLELD EEEDSAVHTW FYDHKPLVKT KLINGPSYRR WNLSLPIMAT LHRLAGQLLS DLIDRNYFYL FDMPSFFTAK ALNMCIPGGP
0301: KFEPLYRDME KGDEDWNEFN DINKLIIRSP LRTEYRIAFP HLYNNRPRKV KLCVYHSPMI MYIKTEDPDL PAFYYDPLIH PISNTNKEKR ERKVYDDEDD
0401: FALPEGVEPL LRDTQLYTDT TAAGISLLFA PRPFNMRSGR TRRAEDIPLV SEWFKEHCPP AYPVKVRVSY QKLLKCYVLN ELHHRPPKAQ KKKHLFRSLA
0501: ATKFFQSTEL DWVEVGLQVC RQGYNMLNLL IHRKNLNYLH LDYNFNLKPV KTLTTKERKK SRFGNAFHLC REILRLTKLV VDANVQFRLG NVDAFQLADG
0601: LQYIFSHVGQ LTGMYRYKYR LMRQIRMCKD LKHLIYYRFN TGPVGKGPGC GFWAPMWRVW LFFLRGIVPL LERWLGNLLA RQFEGRHSKG VAKTVTKQRV
0701: ESHFDLELRA AVMHDVLDAM PEGIKQNKAR TILQHLSEAW RCWKANIPWK VPGLPVPIEN MILRYVKSKA DWWTNVAHYN RERIRRGATV DKTVCRKNLG
0801: RLTRLWLKAE QERQHNYLKD GPYVTPEEAL AIYTTTVHWL ESRKFSPIPF PPLSYKHDTK LLILALERLK ESYSVAVRLN QQQREELGLI EQAYDNPHEA
0901: LSRIKRHLLT QRGFKEVGIE FMDLYSYLIP VYEIEPLEKI TDAYLDQYLW YEGDKRHLFP NWIKPADSEP PPLLVYKWCQ GINNLQGIWD TGDGQCVVML
1001: QTKFEKFFEK IDLTMLNRLL RLVLDHNIAD YVSAKNNVVL SYKDMSHTNS YGLIRGLQFA SFVVQFYGLL LDLLLLGLTR ASEIAGPPQM PNEFMTFWDT
1101: KVETRHPIRL YSRYIDKVHI MFKFTHEEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWDM KNRLPRSITT LEWENGFVSV
1201: YSKDNPNLLF SMCGFEVRIL PKIRMTQEAF SNTKDGVWNL QNEQTKERTA VAFLRVDDEH MKVFENRVRQ ILMSSGSTTF TKIVNKWNTA LIGLMTYFRE
1301: ATVHTQELLD LLVKCENKIQ TRIKIGLNSK MPSRFPPVIF YTPKEIGGLG MLSMGHILIP QSDLRYSKQT DVGVTHFRSG MSHEEDQLIP NLYRYIQPWE
1401: SEFIDSQRVW AEYALKRQEA QAQNRRLTLE DLEDSWDRGI PRINTLFQKD RHTLAYDKGW RVRTDFKQYQ VLKQNPFWWT HQRHDGKLWN LNNYRTDVIQ
1501: ALGGVEGILE HTLFKGTYFP TWEGLFWEKA SGFEESMKYK KLTNAQRSGL NQIPNRRFTL WWSPTINRAN VYVGFQVQLD LTGIFMHGKI PTLKISLIQI
1601: FRAHLWQKIH ESVVMDLCQV LDQELDALEI ETVQKETIHP RKSYKMNSSC ADVLLFAAHK WPMSKPSLVA ESKDMFDQKA SNKYWIDVQL RWGDYDSHDI
1701: ERYTRAKFMD YTTDNMSIYP SPTGVMIGLD LAYNLHSAFG NWFPGSKPLL AQAMNKIMKS NPALYVLRER IRKGLQLYSS EPTEPYLSSQ NYGEIFSNQI
1801: IWFVDDTNVY RVTIHKTFEG NLTTKPINGA IFIFNPRTGQ LFLKVIHTSV WAGQKRLGQL AKWKTAEEVA ALVRSLPVEE QPKQIIVTRK GMLDPLEVHL
1901: LDFPNIVIKG SELQLPFQAC LKIEKFGDLI LKATEPQMVL FNIYDDWLKS ISSYTAFSRL ILILRALHVN NEKAKMLLKP DKSVVTEPHH IWPSLTDDQW
2001: MKVEVALRDL ILSDYAKKNN VNTSALTQSE IRDIILGAEI TPPSQQRQQI AEIEKQAKEA SQLTAVTTRT TNVHGDELIV TTTSPYEQSA FGSKTDWRVR
2101: AISATNLYLR VNHIYVNSDD IKETGYTYIM PKNILKKFIC VADLRTQIAG YLYGISPPDN PQVKEIRCVV MVPQWGNHQL VHLPSSLPEH DFLNDLEPLG
2201: WLHTQPNELP QLSPQDVTSH SRILENNKQW DGEKCIILTC SFTPGSCSLT SYKLTQTGYE WGRLNKDNGS NPHGYLPTHY EKVQMLLSDR FLGFYMVPES
2301: GPWNYSFTGV KHTLSMKYSV KLGSPKEFYH EEHRPTHFLE FSNMEEADIT EGDREDTFT
Arabidopsis Description
PRP8ASUS2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7J7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.