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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • plastid 3
  • cytosol 2
  • mitochondrion 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:cytosol, mitochondrion, plastid, vacuole
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:vacuole
golgi: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G189600.1 Wheat unclear 99.41 99.36
TraesCS5D01G201300.1 Wheat cytosol 99.28 99.28
HORVU5Hr1G058160.6 Barley cytosol 97.46 99.05
Os06t0167000-02 Rice cytosol, nucleus, plastid 46.99 98.05
TraesCS7B01G029700.1 Wheat plastid 98.05 97.76
Zm00001d045199_P004 Maize cytosol 96.65 96.45
OQU75900 Sorghum cytosol 96.65 96.45
Zm00001d036301_P007 Maize plastid 96.4 96.07
VIT_09s0002g07070.t01 Wine grape cytosol 92.58 93.01
KRH09717 Soybean nucleus 92.15 92.15
KRH23587 Soybean nucleus 92.03 92.03
AT1G80070.1 Thale cress cytosol 91.35 91.31
Solyc07g008880.2.1 Tomato plastid 91.98 90.98
PGSC0003DMT400073947 Potato cytosol 91.86 90.67
Os05t0163250-01 Rice cytosol 21.33 90.14
GSMUA_AchrUn_... Banana nucleus 16.41 89.17
AT4G38780.1 Thale cress cytosol 86.73 87.69
TraesCS1B01G416400.1 Wheat mitochondrion 3.48 76.64
TraesCS1B01G368800.1 Wheat mitochondrion 3.52 76.15
TraesCS1B01G415700.1 Wheat mitochondrion 3.69 75.0
Solyc06g043160.1.1 Tomato cytosol 1.61 73.08
CDY57684 Canola cytosol 1.06 47.17
Bra003548.1-P Field mustard cytosol 1.06 47.17
Protein Annotations
Gene3D:1.20.58.1750Gene3D:1.20.80.40MapMan:16.4.1.4.4Gene3D:3.30.420.230Gene3D:3.40.140.10Gene3D:3.90.1570.40
ncoils:CoilGO:GO:0000398GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005681
GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0017070GO:GO:0030623
InterPro:IPR037518InterPro:JAMM/MPN+_domInterPro:MPNPFAM:PD149576PFAM:PF01398PFAM:PF08082
PFAM:PF08083PFAM:PF08084PFAM:PF10596PFAM:PF10597PFAM:PF10598PFAM:PF12134
InterPro:PRO8NTInterPro:PROCNInterPro:PROCTInterPro:PRP8InterPro:PRP8_domainIVPFscan:PS50249
PANTHER:PTHR11140InterPro:Prp8_U5-snRNA-bdInterPro:Prp8_U6-snRNA-bdInterPro:RNaseH-like_sfInterPro:RRM_spliceosomal_PrP8SMART:SM00232
SUPFAM:SSF53098EnsemblPlantsGene:TraesCS5B01G193600EnsemblPlants:TraesCS5B01G193600.1TIGR:cd08056TIGR:cd13838SEG:seg
Description
No Description!
Coordinates
chr5B:-:350158325..350168980
Molecular Weight (calculated)
274923.0 Da
IEP (calculated)
9.118
GRAVY (calculated)
-0.464
Length
2358 amino acids
Sequence
(BLAST)
0001: MWNGVPPPPP MAAAPPPPGT VGAVPAPPPQ AAAPPQAGQS LTPAELEAQL VEKARKWHQL NSKRYGDKRK FGFVEAQKED MPPEHVRKII RDHGDMSSKK
0101: YRHDKRVYLG ALKFVPHAVY KLLENMPMPW EQVRDVKILY HITGAITFVN EIPWVVEPIY LAQWGSMWIM MRREKRDRRH FKRMRFPPFD DEEPPLDYAD
0201: NLLDVEPLEA IQLELDPDED GAVYKWFYDH KPLVKTKLIN GPSYRKWHLS LPIMATLYRL AGQLLSDLID RNYFYLFDME SFFTAKALNM CIPGGPKFEP
0301: LYRDMEKGDE DWNEFNDINK LIIRQPLRTE YRIAFPHLYN NRPRKVRLCI YHTPMIMYIK TEDPDLPAFY YDPLINPITS TSKIDRREKK ASEEEDEDDF
0401: SLPDGVGPLL KETPLYTDTT AAGISLLFAP KPFNMRSGRT RRAEDIPLVS EWFKEHCPPA YPVKVRVSYQ KLLKCYVLNE LHHRPPKAQK KKHLFRSLQA
0501: TKFFQTTELD WAEAGLQVCK QGYNMLNLLI HRKNLNYLHL DYNFNLKPVK TLTTKERKKS RFGNAFHLCR EILRLTKLVV DANIQFRLGN VDAFQLADGL
0601: QYIFSHVGQL TGMYRYKYRL MRQIRMCKDL KHLIYYRFNT GPVGKGPGCG FWAPMWRVWL FFLRGIVPLL ERWLGNLLAR QFEGRHSKGV AKTVTKQRVE
0701: SHFDLELRTA VMHDVLDAMP EGIKQNKART ILQHLSEAWR CWKANIPWKV PGLPVPIENM ILRYVKSKAD WWTNVAHYNR ERIRRGATVD KTVCRKNLGR
0801: LTRLWLKAEQ ERQHNYLKDG PYVTPEEAVA IYTTTVHWLE SRKFSPIPFP PLSYKHDTKL LILALERLKE SYSVAVRLNQ LQREELGLIE QAYDNPHEAL
0901: SRIKRHLLTQ RAFKEVGIEF MDLYSYLIPV YEIEPLEKIT DAYLDQYLWY EGDKRHLFPN WVKPADSEPP PLLVYKWCQG INNLQDIWDT SDGQCVVMLQ
1001: TKFEKFFEKI DLTLLNRLLR LVLDHNIADY VTAKNNVVLS YKDMSHTNSY GLIRGLQFAS FVVQYYGLVL DLLLLGLTRA SEIAGPPQMP NEFLTYIDTK
1101: VETRHPIRLY SRYIDKVHIM FRFTHEEARD LIQRYLTEHP DPNNENMVGY NNKKCWPRDA RMRLMKHDVN LGRSVFWDMK NRLPRSITTL EWENGFVSVY
1201: SKDNPNLLFS MSGFEVRILP KIRMTQEAFS NTKDGVWNLQ SEQTKERTAI AFLRVDDEHM KVFENRVRQI LMSSGSTTFT KIVNKWNTAL IGLMTYFREA
1301: TVHTQELLDL LVKCENKIQT RIKIGLNSKM PSRFPPVIFY TPKEIGGLGM LSMGHILIPQ SDLRYSKQTD VGVTHFRSGM SHEEDQLIPN LYRYIQPWES
1401: EFIDSQRVWA EYALKRQEAQ SQNRRLTLED LEDSWDRGIP RINTLFQKDR HTLAYDKGWR VRTDFKQYQV LKQNPFWWTH QRHDGKLWNL NNYRTDVIQA
1501: LGGVEGILEH TLFKGTYFPT WEGLFWEKAS GFEESMKYKK LTNAQRSGLN QIPNRRFTLW WSPTINRANV YVGFQVQLDL TGIFMHGKIP TLKISLIQIF
1601: RAHLWQKVHE SVVMDLCQVL DQELDALEIE TVQKETIHPR KSYKMNSSCA DVLLFAAHRW QMSKPSLVSE SKDVFDQKAS NKYWIDVQLR WGDYDSHDIE
1701: RYTRAKFMDY TTDNMSIYPS PTGVMIGLDL AYNLHSAFGN WFPGSKPLLQ QAMNKIMKSN PALYVLRERI RKGLQLYSSE PTEPYLSSQN YGEIFSNQII
1801: WFVDDTNVYR VTIHKTFEGN LTTKPINGAI FIFNPRTGQL FLKVIHTSVW AGQKRLGQLA KWKTAEEVAA LVRSLPVEEQ PKQIIVTRKG MLDPLEVHLL
1901: DFPNIVIKGS ELQLPFQACL KIEKFGDLIL KATEPQMVLY NIYDDWLKSI SSYTAFSRLV LILRALHVNN EKAKMLLKPD KTIVTEPHHI WPSLTDEQWL
2001: KVECALRDLI LSDYAKKNNV NTSALTQSEI RDIILGAEIA PPSQQRQQIA EIEKQSRETP QSTAITTRTT NVHGDELIIT TTSPYEQAAF ASKTDWRVRA
2101: ISATNLYLRV NHIYVNSDDI KETGYTYIMP KNILKKFICI ADLRTQVAGF LYGLSPQDNP QVKEIRCISI PPQHGTHQMV TLPVNLPEHE FLADLEPLGW
2201: MHTQPNEAPQ LSPQDLTSHA KILENNKQWD GEKCIILTCS FTPGSCSLTA YKLTPSGYEW GRSNKDNGSN PHGYLPTHYE KVQMLLSDRF LGFYMVPDNA
2301: PWNYNFMGVK HDPLMKYSMK LGTPRDFYHE DHRPTHFLEF SNIEEGEVAE GDREDTFS
Best Arabidopsis Sequence Match ( AT1G80070.1 )
(BLAST)
0001: MWNNNDGMPL APPGTGGSMM PPPPAAHPSY TALPPPSNPT PPVEPTPEEA EAKLEEKARK WMQLNSKRYG DKRKFGFVET QKEDMPPEHV RKIIRDHGDM
0101: SSKKFRHDKR VYLGALKFVP HAVFKLLENM PMPWEQVRDV KVLYHITGAI TFVNEIPWVV EPIYMAQWGT MWIMMRREKR DRRHFKRMRF PPFDDEEPPL
0201: DYADNLLDVD PLEPIQLELD EEEDSAVHTW FYDHKPLVKT KLINGPSYRR WNLSLPIMAT LHRLAGQLLS DLIDRNYFYL FDMPSFFTAK ALNMCIPGGP
0301: KFEPLYRDME KGDEDWNEFN DINKLIIRSP LRTEYRIAFP HLYNNRPRKV KLCVYHSPMI MYIKTEDPDL PAFYYDPLIH PISNTNKEKR ERKVYDDEDD
0401: FALPEGVEPL LRDTQLYTDT TAAGISLLFA PRPFNMRSGR TRRAEDIPLV SEWFKEHCPP AYPVKVRVSY QKLLKCYVLN ELHHRPPKAQ KKKHLFRSLA
0501: ATKFFQSTEL DWVEVGLQVC RQGYNMLNLL IHRKNLNYLH LDYNFNLKPV KTLTTKERKK SRFGNAFHLC REILRLTKLV VDANVQFRLG NVDAFQLADG
0601: LQYIFSHVGQ LTGMYRYKYR LMRQIRMCKD LKHLIYYRFN TGPVGKGPGC GFWAPMWRVW LFFLRGIVPL LERWLGNLLA RQFEGRHSKG VAKTVTKQRV
0701: ESHFDLELRA AVMHDVLDAM PEGIKQNKAR TILQHLSEAW RCWKANIPWK VPGLPVPIEN MILRYVKSKA DWWTNVAHYN RERIRRGATV DKTVCRKNLG
0801: RLTRLWLKAE QERQHNYLKD GPYVTPEEAL AIYTTTVHWL ESRKFSPIPF PPLSYKHDTK LLILALERLK ESYSVAVRLN QQQREELGLI EQAYDNPHEA
0901: LSRIKRHLLT QRGFKEVGIE FMDLYSYLIP VYEIEPLEKI TDAYLDQYLW YEGDKRHLFP NWIKPADSEP PPLLVYKWCQ GINNLQGIWD TGDGQCVVML
1001: QTKFEKFFEK IDLTMLNRLL RLVLDHNIAD YVSAKNNVVL SYKDMSHTNS YGLIRGLQFA SFVVQFYGLL LDLLLLGLTR ASEIAGPPQM PNEFMTFWDT
1101: KVETRHPIRL YSRYIDKVHI MFKFTHEEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWDM KNRLPRSITT LEWENGFVSV
1201: YSKDNPNLLF SMCGFEVRIL PKIRMTQEAF SNTKDGVWNL QNEQTKERTA VAFLRVDDEH MKVFENRVRQ ILMSSGSTTF TKIVNKWNTA LIGLMTYFRE
1301: ATVHTQELLD LLVKCENKIQ TRIKIGLNSK MPSRFPPVIF YTPKEIGGLG MLSMGHILIP QSDLRYSKQT DVGVTHFRSG MSHEEDQLIP NLYRYIQPWE
1401: SEFIDSQRVW AEYALKRQEA QAQNRRLTLE DLEDSWDRGI PRINTLFQKD RHTLAYDKGW RVRTDFKQYQ VLKQNPFWWT HQRHDGKLWN LNNYRTDVIQ
1501: ALGGVEGILE HTLFKGTYFP TWEGLFWEKA SGFEESMKYK KLTNAQRSGL NQIPNRRFTL WWSPTINRAN VYVGFQVQLD LTGIFMHGKI PTLKISLIQI
1601: FRAHLWQKIH ESVVMDLCQV LDQELDALEI ETVQKETIHP RKSYKMNSSC ADVLLFAAHK WPMSKPSLVA ESKDMFDQKA SNKYWIDVQL RWGDYDSHDI
1701: ERYTRAKFMD YTTDNMSIYP SPTGVMIGLD LAYNLHSAFG NWFPGSKPLL AQAMNKIMKS NPALYVLRER IRKGLQLYSS EPTEPYLSSQ NYGEIFSNQI
1801: IWFVDDTNVY RVTIHKTFEG NLTTKPINGA IFIFNPRTGQ LFLKVIHTSV WAGQKRLGQL AKWKTAEEVA ALVRSLPVEE QPKQIIVTRK GMLDPLEVHL
1901: LDFPNIVIKG SELQLPFQAC LKIEKFGDLI LKATEPQMVL FNIYDDWLKS ISSYTAFSRL ILILRALHVN NEKAKMLLKP DKSVVTEPHH IWPSLTDDQW
2001: MKVEVALRDL ILSDYAKKNN VNTSALTQSE IRDIILGAEI TPPSQQRQQI AEIEKQAKEA SQLTAVTTRT TNVHGDELIV TTTSPYEQSA FGSKTDWRVR
2101: AISATNLYLR VNHIYVNSDD IKETGYTYIM PKNILKKFIC VADLRTQIAG YLYGISPPDN PQVKEIRCVV MVPQWGNHQL VHLPSSLPEH DFLNDLEPLG
2201: WLHTQPNELP QLSPQDVTSH SRILENNKQW DGEKCIILTC SFTPGSCSLT SYKLTQTGYE WGRLNKDNGS NPHGYLPTHY EKVQMLLSDR FLGFYMVPES
2301: GPWNYSFTGV KHTLSMKYSV KLGSPKEFYH EEHRPTHFLE FSNMEEADIT EGDREDTFT
Arabidopsis Description
PRP8ASUS2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7J7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.