Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26035336
plastid: 27992503 |
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g043160.1.1 | Tomato | cytosol | 3.36 | 73.08 |
| HORVU5Hr1G058160.6 | Barley | cytosol | 98.23 | 47.84 |
| Zm00001d045199_P004 | Maize | cytosol | 98.94 | 47.31 |
| OQU75900 | Sorghum | cytosol | 98.76 | 47.23 |
| Zm00001d036301_P007 | Maize | plastid | 98.85 | 47.21 |
| TraesCS5D01G201300.1 | Wheat | cytosol | 98.14 | 47.03 |
| TraesCS5A01G189600.1 | Wheat | unclear | 98.14 | 47.01 |
| HORVU7Hr1G027000.2 | Barley | cytosol | 97.79 | 47.0 |
| TraesCS5B01G193600.1 | Wheat | golgi | 98.05 | 46.99 |
| TraesCS7D01G128800.1 | Wheat | cytosol, plastid | 97.79 | 46.78 |
| TraesCS7A01G129700.1 | Wheat | nucleus | 97.7 | 46.74 |
| TraesCS7B01G029700.1 | Wheat | plastid | 97.7 | 46.68 |
| CDY57684 | Canola | cytosol | 2.12 | 45.28 |
| Bra003548.1-P | Field mustard | cytosol | 2.12 | 45.28 |
| VIT_09s0002g07070.t01 | Wine grape | cytosol | 92.57 | 44.57 |
| KRH09717 | Soybean | nucleus | 91.77 | 43.98 |
| KRH23587 | Soybean | nucleus | 91.59 | 43.89 |
| Solyc07g008880.2.1 | Tomato | plastid | 91.68 | 43.46 |
| AT1G80070.1 | Thale cress | cytosol | 90.71 | 43.45 |
| PGSC0003DMT400073947 | Potato | cytosol | 91.59 | 43.32 |
| AT4G38780.1 | Thale cress | cytosol | 87.61 | 42.45 |
| Os05t0163250-01 | Rice | cytosol | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.58.1750 | Gene3D:1.20.80.40 | MapMan:16.4.1.4.4 | Gene3D:3.30.420.230 | Gene3D:3.40.140.10 | Gene3D:3.90.1570.40 |
| UniProt:A0A0P0WSW9 | ProteinID:BAS96339.1 | ProteinID:BAS96340.1 | ProteinID:BAS96341.1 | ncoils:Coil | GO:GO:0000244 |
| GO:GO:0000386 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005681 | GO:GO:0005682 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0017070 | GO:GO:0030619 | GO:GO:0030620 | GO:GO:0030623 | GO:GO:0071013 |
| GO:GO:0097157 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN | EnsemblPlantsGene:Os06g0167000 | EnsemblPlants:Os06t0167000-02 |
| PFAM:PF01398 | PFAM:PF08084 | PFAM:PF10596 | PFAM:PF10597 | PFAM:PF12134 | InterPro:PROCT |
| InterPro:PRP8 | InterPro:PRP8_domainIV | PFscan:PS50249 | PANTHER:PTHR11140 | InterPro:Prp8_U5-snRNA-bd | InterPro:Prp8_U6-snRNA-bd |
| InterPro:RNaseH-like_sf | SMART:SM00232 | SUPFAM:SSF53098 | UniParc:UPI000393AB4E | SEG:seg | : |
Description
Similar to predicted protein. (Os06t0167000-01);Similar to PRP8 protein (Fragment). (Os06t0167000-02);Similar to predicted protein. (Os06t0167000-03);Similar to predicted protein. (Os06t0167000-04)
Coordinates
chr6:-:3363959..3368261
Molecular Weight (calculated)
130883.0 Da
IEP (calculated)
7.751
GRAVY (calculated)
-0.450
Length
1130 amino acids
Sequence
(BLAST)
(BLAST)
0001: FSNTKDGVWN LQNEQTKERT AIAFLRVDDE HMKVFENRVR QILMSSGSTT FTKIVNKWNT ALIGLMTYFR EATVHTQELL DLLVKCENKI QTRIKIGLNS
0101: KMPSRFPPVI FYTPKEIGGL GMLSMGHILI PQSDLRYSKQ TDVGVTHFRS GMSHEEDQLI PNLYRYIQPW ESEFIDSQRV WAEYALKRQE AQSQNRRLTL
0201: EDLEDSWDRG IPRINTLFQK DRHTLAYDKG WRVRTDFKQY QVLKQNPFWW THQRHDGKLW NLNNYRTDVI QALGGVEGIL EHTLFKGTYF PTWEGLFWEK
0301: ASGFEESMKY KKLTNAQRSG LNQIPNRRFT LWWSPTINRA NVYVGFQVQL DLTGIFMHGK IPTLKISLIQ IFRAHLWQKI HESVVMDLCQ VLDQELDALE
0401: IETVQKETIH PRKSYKMNSS CADILLFAAH RWQMSKPSLV SESKDVFDQK ASNKYWIDVQ LRWGDYDSHD IERYTRAKFM DYTTDNMSIY PSPTGVMIGI
0501: DLAYNLHSAF GNWFPGSKPL LQQAMNKIMK SNPALYVLRE RIRKGLQLYS SEPTEPYLSS QNYGEIFSNQ IIWFVDDTNV YRVTIHKTFE GNLTTKPING
0601: AIFIFNPRTG QLFLKVIHTS VWAGQKRLGQ LAKWKTAEEV AALVRSLPVE EQPKQIIVTR KGMLDPLEVH LLDFPNIVIK GSELQLPFQA CLKIEKFGDL
0701: ILKATEPQMV LYNIYDDWLK SISSFTAFSR IVLILRALHV NNEKAKMLLK PDKTIVTEPH HIWPTLTDEQ WLKVECALRD LILSDYAKKN NVNTSALTQS
0801: EIRDIILGAE IAPPSQQRQQ IAEIEKQSRE TTQLTAVTTR TTNVHGDELI ITTTSPYEQQ AFASKTDWRV RAISATNLYL RVNHIYVNSD DIKETGYTYI
0901: MPKNILKKFI CIADLRTQIA GFLYGLSPQD NPQVKEIRCI AIPPQHGTHQ MVTLPANLPE HEFLNDLEPL GWMHTQPNEA PQLSPQDLTS HAKILENNKQ
1001: WDGEKCIILT CSFTPGSCSL TAYKLTPSGY EWGRSNKDTG SNPHGYLPTH YEKVQMLLSD RFLGFYMVPD NTPWNFNFMG VKHDPLMKYN MKLGTPRDFY
1101: HEDHRPTHFL EFSNIDEGEV AEGDREDTFT
0101: KMPSRFPPVI FYTPKEIGGL GMLSMGHILI PQSDLRYSKQ TDVGVTHFRS GMSHEEDQLI PNLYRYIQPW ESEFIDSQRV WAEYALKRQE AQSQNRRLTL
0201: EDLEDSWDRG IPRINTLFQK DRHTLAYDKG WRVRTDFKQY QVLKQNPFWW THQRHDGKLW NLNNYRTDVI QALGGVEGIL EHTLFKGTYF PTWEGLFWEK
0301: ASGFEESMKY KKLTNAQRSG LNQIPNRRFT LWWSPTINRA NVYVGFQVQL DLTGIFMHGK IPTLKISLIQ IFRAHLWQKI HESVVMDLCQ VLDQELDALE
0401: IETVQKETIH PRKSYKMNSS CADILLFAAH RWQMSKPSLV SESKDVFDQK ASNKYWIDVQ LRWGDYDSHD IERYTRAKFM DYTTDNMSIY PSPTGVMIGI
0501: DLAYNLHSAF GNWFPGSKPL LQQAMNKIMK SNPALYVLRE RIRKGLQLYS SEPTEPYLSS QNYGEIFSNQ IIWFVDDTNV YRVTIHKTFE GNLTTKPING
0601: AIFIFNPRTG QLFLKVIHTS VWAGQKRLGQ LAKWKTAEEV AALVRSLPVE EQPKQIIVTR KGMLDPLEVH LLDFPNIVIK GSELQLPFQA CLKIEKFGDL
0701: ILKATEPQMV LYNIYDDWLK SISSFTAFSR IVLILRALHV NNEKAKMLLK PDKTIVTEPH HIWPTLTDEQ WLKVECALRD LILSDYAKKN NVNTSALTQS
0801: EIRDIILGAE IAPPSQQRQQ IAEIEKQSRE TTQLTAVTTR TTNVHGDELI ITTTSPYEQQ AFASKTDWRV RAISATNLYL RVNHIYVNSD DIKETGYTYI
0901: MPKNILKKFI CIADLRTQIA GFLYGLSPQD NPQVKEIRCI AIPPQHGTHQ MVTLPANLPE HEFLNDLEPL GWMHTQPNEA PQLSPQDLTS HAKILENNKQ
1001: WDGEKCIILT CSFTPGSCSL TAYKLTPSGY EWGRSNKDTG SNPHGYLPTH YEKVQMLLSD RFLGFYMVPD NTPWNFNFMG VKHDPLMKYN MKLGTPRDFY
1101: HEDHRPTHFL EFSNIDEGEV AEGDREDTFT
0001: MWNNNDGMPL APPGTGGSMM PPPPAAHPSY TALPPPSNPT PPVEPTPEEA EAKLEEKARK WMQLNSKRYG DKRKFGFVET QKEDMPPEHV RKIIRDHGDM
0101: SSKKFRHDKR VYLGALKFVP HAVFKLLENM PMPWEQVRDV KVLYHITGAI TFVNEIPWVV EPIYMAQWGT MWIMMRREKR DRRHFKRMRF PPFDDEEPPL
0201: DYADNLLDVD PLEPIQLELD EEEDSAVHTW FYDHKPLVKT KLINGPSYRR WNLSLPIMAT LHRLAGQLLS DLIDRNYFYL FDMPSFFTAK ALNMCIPGGP
0301: KFEPLYRDME KGDEDWNEFN DINKLIIRSP LRTEYRIAFP HLYNNRPRKV KLCVYHSPMI MYIKTEDPDL PAFYYDPLIH PISNTNKEKR ERKVYDDEDD
0401: FALPEGVEPL LRDTQLYTDT TAAGISLLFA PRPFNMRSGR TRRAEDIPLV SEWFKEHCPP AYPVKVRVSY QKLLKCYVLN ELHHRPPKAQ KKKHLFRSLA
0501: ATKFFQSTEL DWVEVGLQVC RQGYNMLNLL IHRKNLNYLH LDYNFNLKPV KTLTTKERKK SRFGNAFHLC REILRLTKLV VDANVQFRLG NVDAFQLADG
0601: LQYIFSHVGQ LTGMYRYKYR LMRQIRMCKD LKHLIYYRFN TGPVGKGPGC GFWAPMWRVW LFFLRGIVPL LERWLGNLLA RQFEGRHSKG VAKTVTKQRV
0701: ESHFDLELRA AVMHDVLDAM PEGIKQNKAR TILQHLSEAW RCWKANIPWK VPGLPVPIEN MILRYVKSKA DWWTNVAHYN RERIRRGATV DKTVCRKNLG
0801: RLTRLWLKAE QERQHNYLKD GPYVTPEEAL AIYTTTVHWL ESRKFSPIPF PPLSYKHDTK LLILALERLK ESYSVAVRLN QQQREELGLI EQAYDNPHEA
0901: LSRIKRHLLT QRGFKEVGIE FMDLYSYLIP VYEIEPLEKI TDAYLDQYLW YEGDKRHLFP NWIKPADSEP PPLLVYKWCQ GINNLQGIWD TGDGQCVVML
1001: QTKFEKFFEK IDLTMLNRLL RLVLDHNIAD YVSAKNNVVL SYKDMSHTNS YGLIRGLQFA SFVVQFYGLL LDLLLLGLTR ASEIAGPPQM PNEFMTFWDT
1101: KVETRHPIRL YSRYIDKVHI MFKFTHEEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWDM KNRLPRSITT LEWENGFVSV
1201: YSKDNPNLLF SMCGFEVRIL PKIRMTQEAF SNTKDGVWNL QNEQTKERTA VAFLRVDDEH MKVFENRVRQ ILMSSGSTTF TKIVNKWNTA LIGLMTYFRE
1301: ATVHTQELLD LLVKCENKIQ TRIKIGLNSK MPSRFPPVIF YTPKEIGGLG MLSMGHILIP QSDLRYSKQT DVGVTHFRSG MSHEEDQLIP NLYRYIQPWE
1401: SEFIDSQRVW AEYALKRQEA QAQNRRLTLE DLEDSWDRGI PRINTLFQKD RHTLAYDKGW RVRTDFKQYQ VLKQNPFWWT HQRHDGKLWN LNNYRTDVIQ
1501: ALGGVEGILE HTLFKGTYFP TWEGLFWEKA SGFEESMKYK KLTNAQRSGL NQIPNRRFTL WWSPTINRAN VYVGFQVQLD LTGIFMHGKI PTLKISLIQI
1601: FRAHLWQKIH ESVVMDLCQV LDQELDALEI ETVQKETIHP RKSYKMNSSC ADVLLFAAHK WPMSKPSLVA ESKDMFDQKA SNKYWIDVQL RWGDYDSHDI
1701: ERYTRAKFMD YTTDNMSIYP SPTGVMIGLD LAYNLHSAFG NWFPGSKPLL AQAMNKIMKS NPALYVLRER IRKGLQLYSS EPTEPYLSSQ NYGEIFSNQI
1801: IWFVDDTNVY RVTIHKTFEG NLTTKPINGA IFIFNPRTGQ LFLKVIHTSV WAGQKRLGQL AKWKTAEEVA ALVRSLPVEE QPKQIIVTRK GMLDPLEVHL
1901: LDFPNIVIKG SELQLPFQAC LKIEKFGDLI LKATEPQMVL FNIYDDWLKS ISSYTAFSRL ILILRALHVN NEKAKMLLKP DKSVVTEPHH IWPSLTDDQW
2001: MKVEVALRDL ILSDYAKKNN VNTSALTQSE IRDIILGAEI TPPSQQRQQI AEIEKQAKEA SQLTAVTTRT TNVHGDELIV TTTSPYEQSA FGSKTDWRVR
2101: AISATNLYLR VNHIYVNSDD IKETGYTYIM PKNILKKFIC VADLRTQIAG YLYGISPPDN PQVKEIRCVV MVPQWGNHQL VHLPSSLPEH DFLNDLEPLG
2201: WLHTQPNELP QLSPQDVTSH SRILENNKQW DGEKCIILTC SFTPGSCSLT SYKLTQTGYE WGRLNKDNGS NPHGYLPTHY EKVQMLLSDR FLGFYMVPES
2301: GPWNYSFTGV KHTLSMKYSV KLGSPKEFYH EEHRPTHFLE FSNMEEADIT EGDREDTFT
0101: SSKKFRHDKR VYLGALKFVP HAVFKLLENM PMPWEQVRDV KVLYHITGAI TFVNEIPWVV EPIYMAQWGT MWIMMRREKR DRRHFKRMRF PPFDDEEPPL
0201: DYADNLLDVD PLEPIQLELD EEEDSAVHTW FYDHKPLVKT KLINGPSYRR WNLSLPIMAT LHRLAGQLLS DLIDRNYFYL FDMPSFFTAK ALNMCIPGGP
0301: KFEPLYRDME KGDEDWNEFN DINKLIIRSP LRTEYRIAFP HLYNNRPRKV KLCVYHSPMI MYIKTEDPDL PAFYYDPLIH PISNTNKEKR ERKVYDDEDD
0401: FALPEGVEPL LRDTQLYTDT TAAGISLLFA PRPFNMRSGR TRRAEDIPLV SEWFKEHCPP AYPVKVRVSY QKLLKCYVLN ELHHRPPKAQ KKKHLFRSLA
0501: ATKFFQSTEL DWVEVGLQVC RQGYNMLNLL IHRKNLNYLH LDYNFNLKPV KTLTTKERKK SRFGNAFHLC REILRLTKLV VDANVQFRLG NVDAFQLADG
0601: LQYIFSHVGQ LTGMYRYKYR LMRQIRMCKD LKHLIYYRFN TGPVGKGPGC GFWAPMWRVW LFFLRGIVPL LERWLGNLLA RQFEGRHSKG VAKTVTKQRV
0701: ESHFDLELRA AVMHDVLDAM PEGIKQNKAR TILQHLSEAW RCWKANIPWK VPGLPVPIEN MILRYVKSKA DWWTNVAHYN RERIRRGATV DKTVCRKNLG
0801: RLTRLWLKAE QERQHNYLKD GPYVTPEEAL AIYTTTVHWL ESRKFSPIPF PPLSYKHDTK LLILALERLK ESYSVAVRLN QQQREELGLI EQAYDNPHEA
0901: LSRIKRHLLT QRGFKEVGIE FMDLYSYLIP VYEIEPLEKI TDAYLDQYLW YEGDKRHLFP NWIKPADSEP PPLLVYKWCQ GINNLQGIWD TGDGQCVVML
1001: QTKFEKFFEK IDLTMLNRLL RLVLDHNIAD YVSAKNNVVL SYKDMSHTNS YGLIRGLQFA SFVVQFYGLL LDLLLLGLTR ASEIAGPPQM PNEFMTFWDT
1101: KVETRHPIRL YSRYIDKVHI MFKFTHEEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWDM KNRLPRSITT LEWENGFVSV
1201: YSKDNPNLLF SMCGFEVRIL PKIRMTQEAF SNTKDGVWNL QNEQTKERTA VAFLRVDDEH MKVFENRVRQ ILMSSGSTTF TKIVNKWNTA LIGLMTYFRE
1301: ATVHTQELLD LLVKCENKIQ TRIKIGLNSK MPSRFPPVIF YTPKEIGGLG MLSMGHILIP QSDLRYSKQT DVGVTHFRSG MSHEEDQLIP NLYRYIQPWE
1401: SEFIDSQRVW AEYALKRQEA QAQNRRLTLE DLEDSWDRGI PRINTLFQKD RHTLAYDKGW RVRTDFKQYQ VLKQNPFWWT HQRHDGKLWN LNNYRTDVIQ
1501: ALGGVEGILE HTLFKGTYFP TWEGLFWEKA SGFEESMKYK KLTNAQRSGL NQIPNRRFTL WWSPTINRAN VYVGFQVQLD LTGIFMHGKI PTLKISLIQI
1601: FRAHLWQKIH ESVVMDLCQV LDQELDALEI ETVQKETIHP RKSYKMNSSC ADVLLFAAHK WPMSKPSLVA ESKDMFDQKA SNKYWIDVQL RWGDYDSHDI
1701: ERYTRAKFMD YTTDNMSIYP SPTGVMIGLD LAYNLHSAFG NWFPGSKPLL AQAMNKIMKS NPALYVLRER IRKGLQLYSS EPTEPYLSSQ NYGEIFSNQI
1801: IWFVDDTNVY RVTIHKTFEG NLTTKPINGA IFIFNPRTGQ LFLKVIHTSV WAGQKRLGQL AKWKTAEEVA ALVRSLPVEE QPKQIIVTRK GMLDPLEVHL
1901: LDFPNIVIKG SELQLPFQAC LKIEKFGDLI LKATEPQMVL FNIYDDWLKS ISSYTAFSRL ILILRALHVN NEKAKMLLKP DKSVVTEPHH IWPSLTDDQW
2001: MKVEVALRDL ILSDYAKKNN VNTSALTQSE IRDIILGAEI TPPSQQRQQI AEIEKQAKEA SQLTAVTTRT TNVHGDELIV TTTSPYEQSA FGSKTDWRVR
2101: AISATNLYLR VNHIYVNSDD IKETGYTYIM PKNILKKFIC VADLRTQIAG YLYGISPPDN PQVKEIRCVV MVPQWGNHQL VHLPSSLPEH DFLNDLEPLG
2201: WLHTQPNELP QLSPQDVTSH SRILENNKQW DGEKCIILTC SFTPGSCSLT SYKLTQTGYE WGRLNKDNGS NPHGYLPTHY EKVQMLLSDR FLGFYMVPES
2301: GPWNYSFTGV KHTLSMKYSV KLGSPKEFYH EEHRPTHFLE FSNMEEADIT EGDREDTFT
Arabidopsis Description
PRP8ASUS2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7J7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.