Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G80070.1 | Thale cress | cytosol | 92.2 | 91.14 |
| VIT_09s0002g07070.t01 | Wine grape | cytosol | 90.44 | 89.86 |
| KRH23587 | Soybean | nucleus | 90.18 | 89.19 |
| KRH09717 | Soybean | nucleus | 90.09 | 89.1 |
| Solyc07g008880.2.1 | Tomato | plastid | 90.61 | 88.63 |
| PGSC0003DMT400073947 | Potato | cytosol | 90.52 | 88.36 |
| Os06t0167000-02 | Rice | cytosol, nucleus, plastid | 42.45 | 87.61 |
| TraesCS5A01G189600.1 | Wheat | unclear | 87.82 | 86.82 |
| TraesCS5B01G193600.1 | Wheat | golgi | 87.69 | 86.73 |
| TraesCS7A01G129700.1 | Wheat | nucleus | 87.78 | 86.66 |
| TraesCS7B01G029700.1 | Wheat | plastid | 87.82 | 86.6 |
| OQU75900 | Sorghum | cytosol | 87.26 | 86.12 |
| TraesCS6D01G372100.1 | Wheat | mitochondrion | 4.5 | 76.09 |
| Os05t0163250-01 | Rice | cytosol | 17.8 | 74.37 |
| Zm00001d008845_P001 | Maize | nucleus | 10.59 | 69.77 |
| TraesCS1B01G416400.1 | Wheat | mitochondrion | 2.53 | 55.14 |
| TraesCS1B01G415700.1 | Wheat | mitochondrion | 2.7 | 54.31 |
| TraesCS1B01G368800.1 | Wheat | mitochondrion | 2.53 | 54.13 |
| Solyc06g043160.1.1 | Tomato | cytosol | 1.16 | 51.92 |
| HORVU7Hr1G073700.1 | Barley | cytosol | 0.21 | 17.24 |
Protein Annotations
| Gene3D:1.20.58.1750 | Gene3D:1.20.80.40 | MapMan:16.4.1.4.4 | Gene3D:3.30.420.230 | Gene3D:3.40.140.10 | Gene3D:3.90.1570.40 |
| ArrayExpress:AT4G38780 | EnsemblPlantsGene:AT4G38780 | RefSeq:AT4G38780 | TAIR:AT4G38780 | RefSeq:AT4G38780-TAIR-G | EnsemblPlants:AT4G38780.1 |
| TAIR:AT4G38780.1 | Unigene:At.31150 | ncoils:Coil | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0017070 | GO:GO:0030529 |
| GO:GO:0030623 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN | PFAM:PD149576 | PFAM:PF01398 |
| PFAM:PF08082 | PFAM:PF08083 | PFAM:PF08084 | PFAM:PF10596 | PFAM:PF10597 | PFAM:PF10598 |
| PFAM:PF12134 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | InterPro:PRO8NT | InterPro:PROCN |
| InterPro:PROCT | InterPro:PRP8 | InterPro:PRP8_domainIV | PFscan:PS50249 | PANTHER:PTHR11140 | InterPro:Prp8_U5-snRNA-bd |
| InterPro:Prp8_U6-snRNA-bd | InterPro:RNaseH-like_sf | InterPro:RRM_spliceosomal_PrP8 | SMART:SM00232 | SUPFAM:SSF53098 | UniParc:UPI000034F1A1 |
| SEG:seg | : | : | : | : | : |
Description
Pre-mRNA-processing-splicing factor [Source:TAIR;Acc:AT4G38780]
Coordinates
chr4:-:18101296..18111082
Molecular Weight (calculated)
271530.0 Da
IEP (calculated)
9.081
GRAVY (calculated)
-0.458
Length
2332 amino acids
Sequence
(BLAST)
(BLAST)
0001: MWNIDGTSLA PPGTDGSRMQ TPSHPADHPS YTAPSNRNTP TVPTPEDAEA KLEKKARTWM QLNSKRDHGD MSSKKHRLDK RVYLGALKFV PHAVFKLLEN
0101: MPMPWEQVRD VKVLYHITGA ITFVNEVRWV VEPIYMAQWG SMWIMMRREK RDRRHFKRMR FPPFDDEEPP LDYADNLLDV DPLEAIQLEL DEEEDSAVYS
0201: WFYDHKPLVK TKMINGPSYQ TWNLSLPIMS TLHRLAAQLL SDLVDRNYFY LFDMPSFFTA KALNMCIPGG PKFEPLHRDM EKGDEDWNEF NDINKLIIRS
0301: PLRTEYKVAF PHLYNNRPRK VKLCVYHTPM VMYIKTEDPD LPAFYYDPLI HPISNSNNTN KEQRKSNGYD DDGDDFVLPE GLEPLLNNSP LYTDTTAPGI
0401: SLLFAPRPFN MRSGRTRRAE DIPLVAEWFK EHCPPAYPVK VRVSYQKLLK CYLLNELHHR PPKAQKKKHL FRSLAATKFF QSTELDWVEV GLQVCRQGYN
0501: MLNLLIHRKN LNYLHLDYNF NLKPVKTLTT KERKKSRFGN AFHLCREILR LTKLVVDANV QFRLGNVDAF QLADGLQYIF SHVGQLTGMY RYKYRLMRQI
0601: RMCKDLKHLI YYRFNTGPVG KGPGCGFWAP MWRVWLFFLR GIVPLLERWL GNLLARQFEG RHSKGVAKTV TKQRVESHFD LELRAAVMHD VVDAMPEGIK
0701: QNKARTILQH LSEAWRCWKA NIPWKVPGLP VAIENMILRY VKSKADWWTN VAHYNRERIR RGATVDKTVC RKNLGRLTRL WLKAEQERQH NFQKDGPYVT
0801: ADEGIAIYST TVNWLESRKF SAIPFPPLSY KHDTKLLILA LERLKESYSA AVKLNQQQRE ELGLIEQAYD NPHEALMRIK RHLLTQHSFK EVGIEFMDLY
0901: SHLIPVYQID PLEKITDAYL DQYLWYEGDK RHLFPNWIKP ADSEPPPLLV YKWCQGINNL QGIWDTSDGQ CVVMLQTKFE KLFEKIDLTV LNSLLRLVLD
1001: PKLANYVTGK NNVVLSYKDM SYTNTYGLIR GLQFASFVVQ FYGLVLDLLL LGLTRASEIA GPPQRPNEFM TYWDTKVETR HPIRLYSRYI DKVHIMFKFT
1101: HEEARDLIQR HLTERPDPNN ENMVGYNNKK CWPRDARMRL MKHDVNLGRS VFWDMKNRLP RSITTLEWEN GFVSVYSKDN PNLLFSMCGF EVRVLPKIRM
1201: GQEAFSSTRD GVWNLQNEQT KERTAVAFLR ADDEHMKVFE NRVRQILMSS GSTTFTKIVN KWNTALIGLM TYFREATVHT QELLDLLVKC ENKIQTRVKI
1301: GLNSKMPSRF PPVIFYTPKE IGGLGMLSMG HILIPQSDLR YSNQTDVGVS HFRSGMSHEE DQLIPNLYRY IQPWESEFID SQRVWAEYAL KRQEAQAQNR
1401: RLTLEDLEDS WDRGIPRINT LFQKDRHTLA YDKGWRVRTD FKQYQALKQN PFWWTHQRHD GKLWNLNNYR TDVIQALGGV EGILEHTLFK GTYFPTWEGL
1501: FWEKASGFEE SMKYKKLTNA QRSGLNQIPN RRFTLWWSPT INRANVYVGF QVQLDLTGIY MHGKIPTLKI SLIQIFRAHL WQKIHESVVM DLCQVLDQEL
1601: EPLEIETVQK ETIHPRKSYK MNSSCADVLL FAAHKWPMSK PSLIAESKDV FDQKASNKYW IDVQLRWGDY DSHDIERYTK AKFMDYTTDN MSIYPSPTGV
1701: IIGLDLAYNL HSAFGNWFPG SKPLLAQAMN KIMKSNPALY VLRERIRKGL QLYSSEPTEP YLSSQNYGEI FSNQIIWFVD DTNVYRVTIH KTFEGNLTTK
1801: PINGVIFIFN PRTGQLFLKI IHTSVWAGQK RLGQLAKWKT AEEVAALVRS LPVEEQPKQV IVTRKGMLDP LEVHLLDFPN IVIKGSELQL PFQACLKIEK
1901: FGDLILKATE PQMALFNIYD DWLMTVSSYT AFQRLILILR ALHVNNEKAK MLLKPDMSVV TEPNHIWPSL TDDQWMKVEV ALRDLILSDY AKKNKVNTSA
2001: LTQSEIRDII LGAEITPPSQ QRQQIAEIEK QAKEASQLTA VTTRTTNVHG DELISTTISP YEQSAFGSKT DWRVRAISAT NLYLRVNHIY VNSDDIKETG
2101: YTYIMPKNIL KKFICIADLR TQIAGYLYGI SPPDNPQVKE IRCVVMVPQC GNHQQVQLPS SLPEHQFLDD LEPLGWIHTQ PNELPQLSPQ DVTFHTRVLE
2201: NNKQWDAEKC IILTCSFTPG SCSLTSYKLT QAGYEWGRLN KDTGSNPHGY LPTHYEKVQM LLSDRFFGFY MVPENGPWNY NFMGANHTVS INYSLTLGTP
2301: KEYYHQVHRP THFLQFSKME EDGDLDRDDS FA
0101: MPMPWEQVRD VKVLYHITGA ITFVNEVRWV VEPIYMAQWG SMWIMMRREK RDRRHFKRMR FPPFDDEEPP LDYADNLLDV DPLEAIQLEL DEEEDSAVYS
0201: WFYDHKPLVK TKMINGPSYQ TWNLSLPIMS TLHRLAAQLL SDLVDRNYFY LFDMPSFFTA KALNMCIPGG PKFEPLHRDM EKGDEDWNEF NDINKLIIRS
0301: PLRTEYKVAF PHLYNNRPRK VKLCVYHTPM VMYIKTEDPD LPAFYYDPLI HPISNSNNTN KEQRKSNGYD DDGDDFVLPE GLEPLLNNSP LYTDTTAPGI
0401: SLLFAPRPFN MRSGRTRRAE DIPLVAEWFK EHCPPAYPVK VRVSYQKLLK CYLLNELHHR PPKAQKKKHL FRSLAATKFF QSTELDWVEV GLQVCRQGYN
0501: MLNLLIHRKN LNYLHLDYNF NLKPVKTLTT KERKKSRFGN AFHLCREILR LTKLVVDANV QFRLGNVDAF QLADGLQYIF SHVGQLTGMY RYKYRLMRQI
0601: RMCKDLKHLI YYRFNTGPVG KGPGCGFWAP MWRVWLFFLR GIVPLLERWL GNLLARQFEG RHSKGVAKTV TKQRVESHFD LELRAAVMHD VVDAMPEGIK
0701: QNKARTILQH LSEAWRCWKA NIPWKVPGLP VAIENMILRY VKSKADWWTN VAHYNRERIR RGATVDKTVC RKNLGRLTRL WLKAEQERQH NFQKDGPYVT
0801: ADEGIAIYST TVNWLESRKF SAIPFPPLSY KHDTKLLILA LERLKESYSA AVKLNQQQRE ELGLIEQAYD NPHEALMRIK RHLLTQHSFK EVGIEFMDLY
0901: SHLIPVYQID PLEKITDAYL DQYLWYEGDK RHLFPNWIKP ADSEPPPLLV YKWCQGINNL QGIWDTSDGQ CVVMLQTKFE KLFEKIDLTV LNSLLRLVLD
1001: PKLANYVTGK NNVVLSYKDM SYTNTYGLIR GLQFASFVVQ FYGLVLDLLL LGLTRASEIA GPPQRPNEFM TYWDTKVETR HPIRLYSRYI DKVHIMFKFT
1101: HEEARDLIQR HLTERPDPNN ENMVGYNNKK CWPRDARMRL MKHDVNLGRS VFWDMKNRLP RSITTLEWEN GFVSVYSKDN PNLLFSMCGF EVRVLPKIRM
1201: GQEAFSSTRD GVWNLQNEQT KERTAVAFLR ADDEHMKVFE NRVRQILMSS GSTTFTKIVN KWNTALIGLM TYFREATVHT QELLDLLVKC ENKIQTRVKI
1301: GLNSKMPSRF PPVIFYTPKE IGGLGMLSMG HILIPQSDLR YSNQTDVGVS HFRSGMSHEE DQLIPNLYRY IQPWESEFID SQRVWAEYAL KRQEAQAQNR
1401: RLTLEDLEDS WDRGIPRINT LFQKDRHTLA YDKGWRVRTD FKQYQALKQN PFWWTHQRHD GKLWNLNNYR TDVIQALGGV EGILEHTLFK GTYFPTWEGL
1501: FWEKASGFEE SMKYKKLTNA QRSGLNQIPN RRFTLWWSPT INRANVYVGF QVQLDLTGIY MHGKIPTLKI SLIQIFRAHL WQKIHESVVM DLCQVLDQEL
1601: EPLEIETVQK ETIHPRKSYK MNSSCADVLL FAAHKWPMSK PSLIAESKDV FDQKASNKYW IDVQLRWGDY DSHDIERYTK AKFMDYTTDN MSIYPSPTGV
1701: IIGLDLAYNL HSAFGNWFPG SKPLLAQAMN KIMKSNPALY VLRERIRKGL QLYSSEPTEP YLSSQNYGEI FSNQIIWFVD DTNVYRVTIH KTFEGNLTTK
1801: PINGVIFIFN PRTGQLFLKI IHTSVWAGQK RLGQLAKWKT AEEVAALVRS LPVEEQPKQV IVTRKGMLDP LEVHLLDFPN IVIKGSELQL PFQACLKIEK
1901: FGDLILKATE PQMALFNIYD DWLMTVSSYT AFQRLILILR ALHVNNEKAK MLLKPDMSVV TEPNHIWPSL TDDQWMKVEV ALRDLILSDY AKKNKVNTSA
2001: LTQSEIRDII LGAEITPPSQ QRQQIAEIEK QAKEASQLTA VTTRTTNVHG DELISTTISP YEQSAFGSKT DWRVRAISAT NLYLRVNHIY VNSDDIKETG
2101: YTYIMPKNIL KKFICIADLR TQIAGYLYGI SPPDNPQVKE IRCVVMVPQC GNHQQVQLPS SLPEHQFLDD LEPLGWIHTQ PNELPQLSPQ DVTFHTRVLE
2201: NNKQWDAEKC IILTCSFTPG SCSLTSYKLT QAGYEWGRLN KDTGSNPHGY LPTHYEKVQM LLSDRFFGFY MVPENGPWNY NFMGANHTVS INYSLTLGTP
2301: KEYYHQVHRP THFLQFSKME EDGDLDRDDS FA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.