CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03775
KRH56658

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19990.1	KRH03775	AT5G19960.1	21798944
AT5G19990.1	KRH56658	AT5G19960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44668	Soybean	cytosol, mitochondrion, nucleus	98.56	98.56
Solyc05g018590.2.1	Tomato	nucleus	92.34	92.57
GSMUA_Achr7P09950_001	Banana	cytosol	89.23	92.56
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	92.11	92.33
CDX70903	Canola	cytosol	91.87	92.31
Bra002279.1-P	Field mustard	cytosol	92.34	92.12
AT5G19990.1	Thale cress	cytosol	92.34	92.12
CDY35832	Canola	cytosol	92.34	92.12
VIT_09s0002g05800.t01	Wine grape	cytosol	91.63	91.85
Bra006529.1-P	Field mustard	cytosol	91.63	91.41
AT5G20000.1	Thale cress	cytosol	91.39	91.17
TraesCS6D01G166700.1	Wheat	cytosol, golgi	90.91	90.91
TraesCS6B01G207100.1	Wheat	cytosol	90.91	90.91
TraesCS6A01G177600.1	Wheat	cytosol	90.91	90.91
Zm00001d053616_P002	Maize	cytosol	90.67	89.81
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	90.67	89.81
Os02t0205300-01	Rice	cytosol	90.67	89.39
TraesCS7D01G350300.1	Wheat	cytosol	90.43	89.36
TraesCS7B01G254400.1	Wheat	cytosol	90.43	89.36
TraesCS7A01G372600.1	Wheat	cytosol	90.43	89.36
HORVU7Hr1G084550.2	Barley	cytosol	90.43	89.36
Os06t0600100-01	Rice	plasma membrane	86.12	85.11
EER88603	Sorghum	cytosol	83.49	83.29
HORVU6Hr1G036990.7	Barley	cytosol	90.91	82.25
PGSC0003DMT400038718	Potato	cytosol	81.82	78.98
CDX88865	Canola	cytosol, extracellular	88.04	58.51
CDY42324	Canola	cytosol, extracellular	91.87	53.56
CDY44958	Canola	cytosol, plasma membrane	92.11	53.4
Bra020079.1-P	Field mustard	cytosol	91.87	53.26
KRH47728	Soybean	cytosol, nucleus	45.45	44.6
KRH69005	Soybean	nucleus	45.45	44.6
KRH06311	Soybean	cytosol	45.45	44.6
KRG97280	Soybean	cytosol, nucleus	45.45	44.6
KRH61120	Soybean	endoplasmic reticulum	41.87	43.97
KRH51796	Soybean	cytosol	41.87	43.97
KRH05868	Soybean	cytosol, nucleus	41.63	43.61
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	41.39	43.36
KRH06953	Soybean	cytosol	27.99	43.33
KRH45565	Soybean	endoplasmic reticulum	19.62	40.2
KRH33891	Soybean	endoplasmic reticulum, nucleus	40.19	39.72
KRG92899	Soybean	cytosol, nucleus	40.19	39.72
KRH30674	Soybean	cytosol, nucleus	39.23	39.71
KRH32292	Soybean	cytosol, nucleus	41.39	39.05
KRH19693	Soybean	cytosol	41.39	39.05
KRH67524	Soybean	nucleus	41.39	38.79
KRH68501	Soybean	nucleus	39.23	38.59
KRG95799	Soybean	cytosol, nucleus	41.15	38.56
KRG98107	Soybean	cytosol	38.76	38.39
KRH30673	Soybean	cytosol, nucleus	38.76	38.3
KRH51488	Soybean	mitochondrion	37.8	37.35
KRG96790	Soybean	mitochondrion	27.99	35.24
KRH00031	Soybean	plastid	24.64	29.86
KRG99061	Soybean	cytosol	13.64	28.5
KRG94277	Soybean	cytosol	12.2	24.64
KRH70928	Soybean	cytosol	28.47	19.64
KRH45638	Soybean	cytosol	14.35	18.69
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	26.79	15.47
KRH63585	Soybean	endoplasmic reticulum	29.9	15.36
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	29.9	15.36
KRH44049	Soybean	nucleus	28.95	15.3
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	29.43	15.24
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	29.43	15.22
KRH67721	Soybean	endoplasmic reticulum, nucleus	29.43	15.22
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	29.43	15.17
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	29.43	15.13
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	29.19	15.12
KRH30601	Soybean	cytosol	28.95	15.01
KRH10420	Soybean	mitochondrion	17.22	14.55
KRG96401	Soybean	mitochondrion	26.79	12.19
KRH68139	Soybean	cytosol	18.42	11.49
KRH66707	Soybean	plastid	27.75	11.09
KRH50491	Soybean	cytosol	27.27	10.09
KRG95054	Soybean	plastid	13.88	7.52
Os06t0600301-00	Rice	plasma membrane	1.67	3.1
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100812783	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	EMBL:ACUP02004132	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EMBL:BT095825	UniProt:C6TE07
ncoils:Coil	EnsemblPlantsGene:GLYMA_07G002200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597
GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	EnsemblPlants:KRH46990	ProteinID:KRH46990	ProteinID:KRH46990.1
InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF57	SMART:SM00382
SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI000189D0CF	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:190617..194706

Molecular Weight (calculated)

47091.6 Da

IEP (calculated)

9.197

GRAVY (calculated)

-0.350

Length

418 amino acids

Sequence
(BLAST)

001: MALVGVELKH AAEGVPEANC SAKPTKQGEG LRHYYSLNIH EHQLLLRQKT HNLNRLEAQR NDLNSRVRML REELQLLQEP GSYVGEVVKV MGKNKVLVKV
101: HPEGKYVVDI DKNIDITKIT PSTRVALRND SYVLHLVLPS KVDPLVNLMK VEKVPDSTYD MIGGLDQQIK EIKEVIELPI KHPELFESLG IAQPKGVLLY
201: GPPGTGKTLL ARAVAHHTDC TFIRVSGSEL VQKYIGEGSR MVRELFVMAR EHAPSIIFMD EIDSIGSARM ESGSGNGDSE VQRTMLELLN QLDGFEASNK
301: IKVLMATNRI DILDQALLRP GRIDRKIEFP NPNEESRLDI LKIHSRRMNL MRGIDLKKIA EKMNGASGAE LKAVCTEAGM FALRERRVHV TQEDFEMAVA
401: KVMKKETEKN MSLRKLWK

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.