CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 2
cytosol 4
endoplasmic reticulum 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 25806999
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	98.76	98.76
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	97.03	96.67
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	97.15	96.56
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	93.81	93.93
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	93.69	93.8
Zm00001d027707_P001	Maize	cytosol, plasma membrane	93.07	93.18
Zm00001d048409_P001	Maize	cytosol	92.45	92.91
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	92.33	92.21
Zm00001d032859_P006	Maize	plasma membrane	92.2	91.98
CDY13308	Canola	cytosol	92.2	91.98
Zm00001d014124_P001	Maize	cytosol, plasma membrane	92.2	91.86
Bra003123.1-P	Field mustard	cytosol	91.83	91.6
KRH30601	Soybean	cytosol	91.09	91.32
AT3G53230.1	Thale cress	cytosol	91.96	91.17
KRG99061	Soybean	cytosol	22.28	90.0
Bra006978.1-P	Field mustard	cytosol	89.6	89.27
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	89.73	89.07
KRH63585	Soybean	endoplasmic reticulum	89.73	89.07
KRG94277	Soybean	cytosol	22.77	88.89
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	78.71	87.85
TraesCSU01G001000.1	Wheat	cytosol	86.76	87.3
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	21.04	87.18
TraesCS3B01G154400.1	Wheat	cytosol	82.55	84.64
HORVU0Hr1G006340.1	Barley	cytosol	82.05	84.14
TraesCS1B01G419200.1	Wheat	cytosol	82.05	84.03
TraesCS3A01G145100.1	Wheat	cytosol	82.05	84.03
TraesCS3B01G171200.1	Wheat	cytosol	81.93	84.01
TraesCS3A01G144500.1	Wheat	cytosol	55.32	83.86
TraesCS3B01G171400.1	Wheat	cytosol	75.25	83.63
TraesCS1B01G259200.1	Wheat	cytosol	81.56	83.52
TraesCS3A01G145000.1	Wheat	cytosol	71.78	83.33
EER95525	Sorghum	cytosol	80.45	83.33
TraesCS3B01G172100.1	Wheat	cytosol	81.44	83.29
TraesCS3B01G172000.1	Wheat	cytosol	80.69	83.16
KXG40206	Sorghum	cytosol	80.45	83.12
CDX67563	Canola	cytosol	89.73	82.48
HORVU3Hr1G029450.1	Barley	cytosol	82.05	82.05
HORVU3Hr1G029440.1	Barley	cytosol	82.05	81.45
TraesCS3B01G171300.1	Wheat	cytosol	73.02	80.93
TraesCS5B01G323100.1	Wheat	cytosol	57.92	80.55
TraesCS1A01G248500.1	Wheat	cytosol	59.16	80.07
Zm00001d032117_P001	Maize	cytosol	27.35	69.06
KRH45638	Soybean	cytosol	26.36	66.36
KRH70928	Soybean	cytosol	27.97	37.29
KRH61120	Soybean	endoplasmic reticulum	16.96	34.42
KRH51796	Soybean	cytosol	16.96	34.42
KRH05868	Soybean	cytosol, nucleus	16.83	34.09
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	16.83	34.09
KRH44049	Soybean	nucleus	33.17	33.88
KRG97280	Soybean	cytosol, nucleus	17.57	33.33
KRH06311	Soybean	cytosol	17.57	33.33
KRH69005	Soybean	nucleus	17.57	33.33
KRH47728	Soybean	cytosol, nucleus	17.57	33.33
KRH33891	Soybean	endoplasmic reticulum, nucleus	16.09	30.73
KRG92899	Soybean	cytosol, nucleus	16.09	30.73
KRG98107	Soybean	cytosol	15.84	30.33
KRH30674	Soybean	cytosol, nucleus	15.47	30.27
KRH30673	Soybean	cytosol, nucleus	15.84	30.26
KRH46990	Soybean	nucleus	15.22	29.43
KRH44668	Soybean	cytosol, mitochondrion, nucleus	15.22	29.43
KRH68501	Soybean	nucleus	15.47	29.41
KRH06953	Soybean	cytosol	9.78	29.26
KRH67524	Soybean	nucleus	16.09	29.15
KRG95799	Soybean	cytosol, nucleus	16.09	29.15
KRH32292	Soybean	cytosol, nucleus	15.84	28.89
KRH19693	Soybean	cytosol	15.84	28.89
KRH45565	Soybean	endoplasmic reticulum	7.05	27.94
KRG96790	Soybean	mitochondrion	11.39	27.71
KRH10420	Soybean	mitochondrion	16.96	27.68
KRH51488	Soybean	mitochondrion	14.23	27.19
KRH66707	Soybean	plastid	34.28	26.48
KRG95054	Soybean	plastid	23.64	24.77
KRG96401	Soybean	mitochondrion	28.09	24.7
KRH68139	Soybean	cytosol	18.94	22.84
KRH00031	Soybean	plastid	9.65	22.61
KRH50491	Soybean	cytosol	26.36	18.85

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100791603	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	EMBL:ACUP02002071	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf
InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	EnsemblPlantsGene:GLYMA_03G182800	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	UniProt:I1JPP3	EnsemblPlants:KRH67721
ProteinID:KRH67721	ProteinID:KRH67721.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	UniParc:UPI0002339326	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:39472243..39477063

Molecular Weight (calculated)

89685.7 Da

IEP (calculated)

4.888

GRAVY (calculated)

-0.396

Length

808 amino acids

Sequence
(BLAST)

001: MASQPESSDA KGTKRDFSTA ILERKKAPNR LVVDEAVNDD NSVVALHPDT MEKLQLFRGD TILIKGKKRK DTICIALADE TCEEPKIRMN KVVRNNLRVR
101: LGDVVSVHQC PDVKYGKRVH ILPVDDTIEG VTGNLFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSVEFKV IETDPSEYCV VAPDTEIFCE GEPVKREDEN
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVIGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEVG RLEVLRIHTK NMKLAEDVDL
401: EKIAKDTHGY VGADLAALCT EAALQCIREK MDVIDLEDET IDAEILNSMA VTNEHFQTAL GSSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISVKGPE LLTMWFGESE ANVREIFDKA RGSAPCVLFF DELDSIATQR GSSVGDAGGA
601: ADRVLNQLLT EMDGMSAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEDSRHQI FKACLRKSPV SKDVDLRALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IERERRKRDN PEAMEEDDVE DEIAEIKAAH FEESMKYARR SVSDADIRKY QAFAQTLQQS RGFGSEFRFA DSTSAGGTAA ASDPFSSAGG
801: ADEDDLYN

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.