Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G222100.1 | Wheat | cytosol | 97.88 | 98.25 |
| TraesCS1D01G223800.1 | Wheat | cytosol | 97.63 | 98.0 |
| TraesCS1D01G253100.1 | Wheat | cytosol | 97.51 | 97.88 |
| TraesCS1B01G235500.1 | Wheat | cytosol | 97.26 | 97.62 |
| TraesCS1B01G235300.1 | Wheat | cytosol | 97.14 | 97.5 |
| TraesCS1B01G235400.1 | Wheat | cytosol | 76.59 | 95.79 |
| HORVU1Hr1G060370.1 | Barley | cytosol | 93.52 | 93.06 |
| HORVU1Hr1G060340.2 | Barley | cytosol | 93.52 | 92.37 |
| Os03t0151800-02 | Rice | cytosol, extracellular, nucleus, plasma membrane, plastid | 90.41 | 89.74 |
| EER94171 | Sorghum | cytosol | 90.29 | 89.51 |
| Zm00001d032859_P006 | Maize | plasma membrane | 90.16 | 89.38 |
| EER92840 | Sorghum | cytosol | 90.16 | 89.38 |
| Zm00001d014124_P001 | Maize | cytosol, plasma membrane | 90.16 | 89.27 |
| PGSC0003DMT400027096 | Potato | cytosol | 87.67 | 87.13 |
| Solyc10g084050.1.1 | Tomato | cytosol, nucleus, plastid, unclear | 87.55 | 87.0 |
| KRG96011 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 87.55 | 87.0 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 87.17 | 86.85 |
| KRH67721 | Soybean | endoplasmic reticulum, nucleus | 87.3 | 86.76 |
| CDY11249 | Canola | cytosol | 86.18 | 86.72 |
| AT5G03340.1 | Thale cress | cytosol | 87.42 | 86.67 |
| CDY41581 | Canola | cytosol | 87.05 | 86.51 |
| KRG99061 | Soybean | cytosol | 21.54 | 86.5 |
| PGSC0003DMT400031321 | Potato | cytosol | 86.67 | 86.46 |
| Solyc06g074980.2.1 | Tomato | nucleus | 86.67 | 86.46 |
| Bra001297.1-P | Field mustard | cytosol | 87.05 | 86.4 |
| CDX73996 | Canola | cytosol | 87.05 | 86.4 |
| CDY41316 | Canola | cytosol, extracellular | 87.05 | 86.3 |
| CDY22207 | Canola | cytosol | 87.05 | 86.3 |
| CDY54618 | Canola | cytosol | 86.8 | 86.26 |
| Bra034089.1-P | Field mustard | cytosol | 86.92 | 86.17 |
| KRH32530 | Soybean | endoplasmic reticulum, mitochondrion | 87.17 | 86.1 |
| Bra029795.1-P | Field mustard | cytosol | 86.67 | 86.03 |
| AT3G09840.1 | Thale cress | cytosol | 86.67 | 86.03 |
| CDY07941 | Canola | cytosol | 86.67 | 86.03 |
| PGSC0003DMT400055513 | Potato | cytosol | 86.43 | 86.0 |
| KRH19916 | Soybean | endoplasmic reticulum, mitochondrion | 86.8 | 85.94 |
| CDY13308 | Canola | cytosol | 86.67 | 85.93 |
| PGSC0003DMT400050662 | Potato | cytosol | 86.05 | 85.84 |
| Bra003123.1-P | Field mustard | cytosol | 86.55 | 85.8 |
| AT3G53230.1 | Thale cress | cytosol | 87.05 | 85.77 |
| Solyc11g069720.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 85.8 | 85.59 |
| KRH22853 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 85.8 | 85.38 |
| KRH26511 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 85.68 | 85.25 |
| CDX80862 | Canola | cytosol, plastid | 85.8 | 85.17 |
| Bra006978.1-P | Field mustard | cytosol | 85.93 | 85.08 |
| Solyc09g008070.2.1 | Tomato | cytosol, unclear | 85.55 | 85.02 |
| KRH30601 | Soybean | cytosol | 84.81 | 84.49 |
| KRG94277 | Soybean | cytosol | 21.67 | 84.06 |
| CDX78154 | Canola | cytosol | 77.46 | 83.6 |
| CDX73571 | Canola | cytosol | 77.33 | 83.58 |
| GSMUA_Achr3P00260_001 | Banana | cytosol | 49.07 | 80.74 |
| KRH25081 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 72.73 | 80.66 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 76.84 | 80.65 |
| CDX67563 | Canola | cytosol | 84.81 | 77.47 |
| KRH45638 | Soybean | cytosol | 25.4 | 63.55 |
| Bra005733.1-P | Field mustard | cytosol | 87.3 | 63.5 |
| TraesCSU01G080700.1 | Wheat | cytosol | 16.81 | 31.69 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.4.2.1 | Gene3D:2.40.40.20 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:AAA_ATPase_CDC48 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf | InterPro:CDC48_domain_2-like_sf | InterPro:CDC4_N-term_subdom |
| InterPro:Cdc48_dom2 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02359 | PFAM:PF02933 | ScanProsite:PS00674 |
| PANTHER:PTHR23077 | PANTHER:PTHR23077:SF122 | SMART:SM00382 | SMART:SM01072 | SMART:SM01073 | SUPFAM:SSF50692 |
| SUPFAM:SSF52540 | SUPFAM:SSF54585 | TIGRFAMs:TIGR01243 | EnsemblPlantsGene:TraesCSU01G001000 | EnsemblPlants:TraesCSU01G001000.1 | TIGR:cd00009 |
Description
No Description!
Coordinates
chrUn:-:917501..919912
Molecular Weight (calculated)
89042.2 Da
IEP (calculated)
4.813
GRAVY (calculated)
-0.357
Length
803 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQGDASGK KDYSTAILER KKSPNRLVVD EATNDENSTV ALHPDTMDSL ELFHGDIVLL KGKKRKDTVC ILLPDDTCDK TKVRMNKVVR KNLRVRLGDV
101: VSVHQCPDVK YGKRVHVLPV DDTVQGIAGN LFDAFLRPYF LEAYRPLRKW DLFLVRGGMT SMEFKVVETD PAEYCIVASD TEIFCDGEPV KREDEERLDE
201: VGYDDVGGVR KQMAQIRELV ELPLRHPQLF KCIGVKPPKG ILLYGPPGTS KTLIARAVAN ETGAFFFLIN GPEIMSKMAG ESESNLRKAF EEAEKNAPAI
301: IFIDEIDSIA PKRDKTNGEV ERRIVSQLLT LMDGLKSRAH VIVMGATNRP NSIDPALRRF GRFDWEIDIG VPDEVGRLEV LRIHTKNMKL AEDVELEHVS
401: RDTHGYVGAD LAALCTEAAL QCIREKMDVI DLEDDTIDAE ILNSMAVTND HFKIALGTSN PSALRETVVE VPNVSWEDVG GLEGVKRELQ ETVQYPVEYP
501: EKFEKFGMSP SKGVLFYGPP GCGKTLLAKA IANECQANFI SIKGPELLTM WFGESEANVR EIFDKARQSA PCVLFFDELD SIATQRGNSV GDAGGAADRV
601: LNQLLTEMDG MNAKKTVFII GATNRPDIID PALLRPGRLD QLIYIPLPDX XXXESRLQIF RACLRKSPVA KDVDLNALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDM EKERRLKENP EAMEEDEVDE IKAAHFEESM RYARRSVSDA DIRKYQAFAQ TLQQSRGFGT EFRFADQPAA GTTSATDPFA SSTTAAEEDD
801: LYS
101: VSVHQCPDVK YGKRVHVLPV DDTVQGIAGN LFDAFLRPYF LEAYRPLRKW DLFLVRGGMT SMEFKVVETD PAEYCIVASD TEIFCDGEPV KREDEERLDE
201: VGYDDVGGVR KQMAQIRELV ELPLRHPQLF KCIGVKPPKG ILLYGPPGTS KTLIARAVAN ETGAFFFLIN GPEIMSKMAG ESESNLRKAF EEAEKNAPAI
301: IFIDEIDSIA PKRDKTNGEV ERRIVSQLLT LMDGLKSRAH VIVMGATNRP NSIDPALRRF GRFDWEIDIG VPDEVGRLEV LRIHTKNMKL AEDVELEHVS
401: RDTHGYVGAD LAALCTEAAL QCIREKMDVI DLEDDTIDAE ILNSMAVTND HFKIALGTSN PSALRETVVE VPNVSWEDVG GLEGVKRELQ ETVQYPVEYP
501: EKFEKFGMSP SKGVLFYGPP GCGKTLLAKA IANECQANFI SIKGPELLTM WFGESEANVR EIFDKARQSA PCVLFFDELD SIATQRGNSV GDAGGAADRV
601: LNQLLTEMDG MNAKKTVFII GATNRPDIID PALLRPGRLD QLIYIPLPDX XXXESRLQIF RACLRKSPVA KDVDLNALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDM EKERRLKENP EAMEEDEVDE IKAAHFEESM RYARRSVSDA DIRKYQAFAQ TLQQSRGFGT EFRFADQPAA GTTSATDPFA SSTTAAEEDD
801: LYS
001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
Arabidopsis Description
CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.