Factsheet for Solyc10g084050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
unclear: 26455813

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g072570.2.1
Solyc06g074980.2.1
Solyc09g008070.2.1
Solyc10g084050.1.1
Solyc11g069720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	Solyc04g072570.2.1	AT1G71830.1	15592873
AT3G09840.1	Solyc04g072570.2.1	AT1G71830.1	16473966
AT3G09840.1	Solyc04g072570.2.1	AT1G71830.1	16621602
AT3G09840.1	Solyc04g072570.2.1	AT1G71830.1	17693538
AT3G09840.1	Solyc06g074980.2.1	AT3G09840.1	15592873
AT3G09840.1	Solyc09g008070.2.1	AT3G09840.1	15592873
AT3G09840.1	Solyc10g084050.1.1	AT3G09840.1	15592873
AT3G09840.1	Solyc11g069720.1.1	AT3G09840.1	15592873
AT3G09840.1	Solyc06g074980.2.1	AT3G09840.1	16621602
AT3G09840.1	Solyc09g008070.2.1	AT3G09840.1	16621602
AT3G09840.1	Solyc10g084050.1.1	AT3G09840.1	16621602
AT3G09840.1	Solyc11g069720.1.1	AT3G09840.1	16621602
AT3G09840.1	Solyc06g074980.2.1	AT3G09840.1	17693538
AT3G09840.1	Solyc09g008070.2.1	AT3G09840.1	17693538
AT3G09840.1	Solyc10g084050.1.1	AT3G09840.1	17693538
AT3G09840.1	Solyc11g069720.1.1	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027096	Potato	cytosol	99.75	99.75
VIT_08s0040g01480.t01	Wine grape	cytosol	94.93	95.16
Solyc06g074980.2.1	Tomato	nucleus	93.94	94.29
Solyc09g008070.2.1	Tomato	cytosol, unclear	93.81	93.81
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	93.32	93.66
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	93.32	93.2
Bra001297.1-P	Field mustard	cytosol	92.82	92.71
CDX73996	Canola	cytosol	92.82	92.71
CDY54618	Canola	cytosol	92.7	92.7
CDY22207	Canola	cytosol	92.82	92.59
CDY41316	Canola	cytosol, extracellular	92.82	92.59
CDY41581	Canola	cytosol	92.57	92.57
Bra034089.1-P	Field mustard	cytosol	92.7	92.47
AT5G03340.1	Thale cress	cytosol	92.7	92.47
CDY07941	Canola	cytosol	92.57	92.46
GSMUA_Achr4P26800_001	Banana	cytosol	92.57	92.46
Bra029795.1-P	Field mustard	cytosol	92.57	92.46
CDY11249	Canola	cytosol	91.09	92.23
AT3G09840.1	Thale cress	cytosol	92.33	92.21
Zm00001d048409_P001	Maize	cytosol	91.46	91.92
Zm00001d027707_P001	Maize	cytosol, plasma membrane	91.71	91.82
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	91.58	91.47
CDX80862	Canola	cytosol, plastid	91.34	91.22
Zm00001d032859_P006	Maize	plasma membrane	91.34	91.11
Zm00001d014124_P001	Maize	cytosol, plasma membrane	91.21	90.88
GSMUA_Achr9P23550_001	Banana	mitochondrion	88.12	88.34
TraesCSU01G001000.1	Wheat	cytosol	87.0	87.55
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	20.92	86.67
VIT_06s0061g00340.t01	Wine grape	cytosol	81.44	86.01
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	87.25	84.84
TraesCS3B01G154400.1	Wheat	cytosol	81.68	83.76
HORVU0Hr1G006340.1	Barley	cytosol	81.56	83.63
TraesCS1B01G419200.1	Wheat	cytosol	81.56	83.52
TraesCS3A01G145100.1	Wheat	cytosol	81.56	83.52
TraesCS3B01G171200.1	Wheat	cytosol	81.31	83.38
TraesCS3A01G144500.1	Wheat	cytosol	54.95	83.3
TraesCS3B01G171400.1	Wheat	cytosol	74.63	82.94
TraesCS1B01G259200.1	Wheat	cytosol	80.94	82.89
TraesCS3B01G172100.1	Wheat	cytosol	80.69	82.53
TraesCS3B01G172000.1	Wheat	cytosol	80.07	82.53
TraesCS3A01G145000.1	Wheat	cytosol	71.04	82.47
KXG40206	Sorghum	cytosol	79.46	82.1
EER95525	Sorghum	cytosol	79.21	82.05
HORVU3Hr1G029450.1	Barley	cytosol	81.56	81.56
HORVU3Hr1G029440.1	Barley	cytosol	81.56	80.96
TraesCS5B01G323100.1	Wheat	cytosol	57.67	80.21
TraesCS3B01G171300.1	Wheat	cytosol	72.15	79.97
TraesCS1A01G248500.1	Wheat	cytosol	58.66	79.4
Zm00001d032117_P001	Maize	cytosol	27.35	69.06
Bra005733.1-P	Field mustard	cytosol	92.2	67.48
Solyc05g012190.2.1	Tomato	cytosol	29.08	38.46
Solyc01g109940.2.1	Tomato	nucleus	16.96	34.42
Solyc10g054040.1.1	Tomato	cytosol, unclear	16.58	33.58
Solyc03g123730.2.1	Tomato	nucleus	17.08	32.24
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	17.08	32.17
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	7.43	31.58
Solyc01g068330.2.1	Tomato	nucleus	31.56	31.06
Solyc05g018590.2.1	Tomato	nucleus	15.22	29.5
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	15.22	29.5
Solyc06g082660.2.1	Tomato	cytosol, nucleus	15.1	29.47
Solyc06g082630.2.1	Tomato	cytosol, plastid	15.1	29.47
Solyc01g099760.2.1	Tomato	nucleus, plastid	15.1	28.84
Solyc06g083620.2.1	Tomato	nucleus, plastid	15.72	28.6
Solyc10g078320.1.1	Tomato	nucleus	33.04	27.05
Solyc06g008730.2.1	Tomato	cytosol	27.97	24.33
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	25.87	18.53

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	UniProt:K4D3J1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933
PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072
SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	EnsemblPlantsGene:Solyc10g084050.1	EnsemblPlants:Solyc10g084050.1.1
TIGRFAMs:TIGR01243	UniParc:UPI000276A0CE	InterPro:Vps4_C	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:63724433..63729309

Molecular Weight (calculated)

89803.0 Da

IEP (calculated)

4.910

GRAVY (calculated)

-0.396

Length

808 amino acids

Sequence
(BLAST)

001: MTNKAESSDS KGTKRDFSTA ILERKKSPNR LVVDEATNDD NSVVAIHPDT MEKLQLFRGD TILIKGKKRK DTICIALADD TCDVPKIRMN KVVRNNLRVR
101: LGDVVSVHQC PDVKYGKRVH ILPIDDTIEG VTGNLFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSVEFKV IETDPAEYCV VAPDTEIFCE GEPVIREDEN
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT NGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEVG RLEVLRIHTK NMKLAEEVDL
401: ERICKDTHGY VGADLAALCT EAALQCIREK MDVIDLEDET IDAEILNSMA VTNEHFQTAL GTSNPSALRE TVVEVPNVSW EDIGGLGNVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GSSSGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEDSRHQI FKACLRKSPL SKDIDLRALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEREKRRSEN PEAMEEDVED EVPEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFSE TSTAGTTGTA ADPFATSAGG
801: ADEDDLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.