Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 5
- extracellular 3
- vacuole 3
- plasma membrane 4
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0125g00170.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 65.07 | 64.73 |
| KRH50491 | Soybean | cytosol | 59.04 | 58.94 |
| CDX69950 | Canola | cytosol | 56.47 | 58.33 |
| CDY62119 | Canola | cytosol | 56.38 | 58.24 |
| Bra009342.1-P | Field mustard | cytosol | 57.0 | 57.36 |
| GSMUA_Achr11P... | Banana | cytosol | 56.91 | 57.27 |
| AT5G08470.1 | Thale cress | cytosol | 56.91 | 56.81 |
| HORVU0Hr1G013350.2 | Barley | cytosol | 14.89 | 54.55 |
| TraesCS7B01G174800.1 | Wheat | cytosol | 46.01 | 50.39 |
| EES15200 | Sorghum | cytosol | 48.49 | 50.0 |
| TraesCS7D01G277100.1 | Wheat | cytosol, peroxisome, plastid | 47.78 | 49.45 |
| TraesCS7A01G277100.1 | Wheat | peroxisome | 47.78 | 49.45 |
| HORVU7Hr1G058410.7 | Barley | cytosol, peroxisome | 48.23 | 49.14 |
| Zm00001d049974_P004 | Maize | peroxisome | 46.9 | 47.44 |
| TraesCS5B01G299200.1 | Wheat | mitochondrion | 44.95 | 46.34 |
| TraesCS5D01G306600.2 | Wheat | mitochondrion | 44.77 | 46.16 |
| TraesCS5A01G301500.1 | Wheat | mitochondrion | 43.88 | 46.0 |
| HORVU5Hr1G078590.8 | Barley | plastid | 44.5 | 44.42 |
| Solyc08g021990.1.1 | Tomato | cytosol, nucleus, plastid | 5.32 | 31.58 |
| Solyc01g109940.2.1 | Tomato | nucleus | 10.02 | 28.39 |
| Solyc10g054040.1.1 | Tomato | cytosol, unclear | 9.93 | 28.07 |
| Solyc05g018570.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 10.2 | 27.58 |
| Solyc05g018590.2.1 | Tomato | nucleus | 10.2 | 27.58 |
| Solyc05g012190.2.1 | Tomato | cytosol | 14.54 | 26.84 |
| Solyc11g069720.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 18.88 | 26.46 |
| Solyc06g074980.2.1 | Tomato | nucleus | 18.79 | 26.34 |
| Solyc10g084050.1.1 | Tomato | cytosol, nucleus, plastid, unclear | 18.53 | 25.87 |
| Solyc09g008070.2.1 | Tomato | cytosol, unclear | 18.35 | 25.62 |
| Solyc03g112590.2.1 | Tomato | cytosol, nucleus, plastid | 18.62 | 25.27 |
| Solyc06g082630.2.1 | Tomato | cytosol, plastid | 9.04 | 24.64 |
| Solyc06g082660.2.1 | Tomato | cytosol, nucleus | 9.04 | 24.64 |
| Solyc01g068330.2.1 | Tomato | nucleus | 17.91 | 24.6 |
| Solyc03g123730.2.1 | Tomato | nucleus | 9.31 | 24.53 |
| Solyc06g063140.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 9.22 | 24.24 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 9.4 | 23.87 |
| Solyc01g099760.2.1 | Tomato | nucleus, plastid | 8.87 | 23.64 |
| Solyc06g008730.2.1 | Tomato | cytosol | 17.55 | 21.31 |
| Solyc10g078320.1.1 | Tomato | nucleus | 17.73 | 20.26 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:23.4.1.5.1.1 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS |
| InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf | InterPro:CDC48_domain_2-like_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005777 | GO:GO:0005778 | GO:GO:0006625 | GO:GO:0006629 | GO:GO:0006635 | GO:GO:0006810 |
| GO:GO:0007031 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016558 | GO:GO:0016787 | GO:GO:0042623 | UniProt:K4BSY9 | InterPro:P-loop_NTPase |
| InterPro:PEX-N_psi_beta-barrel | PFAM:PF00004 | PFAM:PF09262 | ScanProsite:PS00674 | PANTHER:PTHR23077 | PANTHER:PTHR23077:SF12 |
| InterPro:Pex1 | SMART:SM00382 | SUPFAM:SSF50692 | SUPFAM:SSF52540 | SUPFAM:SSF54585 | EnsemblPlantsGene:Solyc04g057960.2 |
| EnsemblPlants:Solyc04g057960.2.1 | UniParc:UPI000276602E | SEG:seg | : | : | : |
Description
Peroxisome biogenesis protein 1 [Source:Projected from Arabidopsis thaliana (AT5G08470) UniProtKB/Swiss-Prot;Acc:Q9FNP1]
Coordinates
chr4:-:55068680..55088663
Molecular Weight (calculated)
123241.0 Da
IEP (calculated)
5.870
GRAVY (calculated)
-0.058
Length
1128 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELEVRVVAG IESCFVSLPV TLLQTLESTT ASGYLPPVLA LELRSGNNLW RLAWSGSASS NPFPNSIQIA KQYAECIGLL DRTVVQVKVV SNLPKATMVT
0101: IEPDTEDDWE VLELNAEHAE QAILKQVAIV YGAMRFPLWL HGQTIITFKV VSTFPLTPVV QLVPGTEVAV APKRRKRNIS SGEESMMQDD ELSVSKALLR
0201: VQDTDDQCIH KYEAEGVEMS VVLTSAIFIH PETASIYSFE PLQTVVIIPR LLPRETKKNH ETYSRRGKSS VTSKEGSVGV LPDKHDIHQA MVRLIFSESV
0301: AKGHIMLPRS IRLYLKAELH SCVYVKRFNV KLKKEIPPVL LSPCEFKIFQ ETGVSEENNA EALGKNNNNK TLTTVLRTNS DIEMGSSDWS IHEEIAAAFS
0401: YESSKEDKEM SIKSDIKKDI AAILHRWCLA QLHAVKIKAG VEVKSLILGN TTLLHFKAKD SRSIKHGVQT MNGGETSLDA MYVLSTTDGS LRDEAIDAYE
0501: VAFDEGSKLT TSPKSFEPWL GKLQLGNGIS IRTVREKLFA KSTSLTTSSL DWMGTAAPDV INRLVVLLSS ASWMLSSAYD FPLPGHILIH GPSGSGKTLL
0601: ATVAAKFAEE SEDILAHIIF LSCSKIALEK PSAIRQALLS YVADALDHAP SVVVFDDLDS IVAASSESEA SQPSSSSAVL AEYFADIMDE YEEKRRNTCG
0701: IGPVAFIACA QSLTNLPQKL TSSGRFDFHV KLSAPATTER GALLKHIIQK RSLQCSDDTL LDIASKCDGY DAYDLEILVD RSVHAATARF LSSDLAVGSQ
0801: EKPVLFQDDF LRAMHEFVPV AMRDITKPAA DGGRSGWEDV GGLNDIRNAI IEMIELPSKF PNIFAQAPLR MRSNVLLYGP PGCGKTHIVG AAAAACSLRF
0901: ISVKGPELLN KYIGASEQAV RDIFSKAAAA APCLLFFDEF DSIAPKRGHD NTGVTDRVVN QFLTELDGVE VLTGVFVFAA TSRPDLLDAA LLRPGRLDRL
1001: LFCDFPSQHE RSEILSVLSR KLPLASDVDL DVVARLTEGF SGADLQALLS DAQLEAVHDL LDSENAGKPD KKPVISDALL KSIASKAKSS VSDAEKQRLY
1101: DIYSQFLDSK RSVAAQSRDA KGKRATLA
0101: IEPDTEDDWE VLELNAEHAE QAILKQVAIV YGAMRFPLWL HGQTIITFKV VSTFPLTPVV QLVPGTEVAV APKRRKRNIS SGEESMMQDD ELSVSKALLR
0201: VQDTDDQCIH KYEAEGVEMS VVLTSAIFIH PETASIYSFE PLQTVVIIPR LLPRETKKNH ETYSRRGKSS VTSKEGSVGV LPDKHDIHQA MVRLIFSESV
0301: AKGHIMLPRS IRLYLKAELH SCVYVKRFNV KLKKEIPPVL LSPCEFKIFQ ETGVSEENNA EALGKNNNNK TLTTVLRTNS DIEMGSSDWS IHEEIAAAFS
0401: YESSKEDKEM SIKSDIKKDI AAILHRWCLA QLHAVKIKAG VEVKSLILGN TTLLHFKAKD SRSIKHGVQT MNGGETSLDA MYVLSTTDGS LRDEAIDAYE
0501: VAFDEGSKLT TSPKSFEPWL GKLQLGNGIS IRTVREKLFA KSTSLTTSSL DWMGTAAPDV INRLVVLLSS ASWMLSSAYD FPLPGHILIH GPSGSGKTLL
0601: ATVAAKFAEE SEDILAHIIF LSCSKIALEK PSAIRQALLS YVADALDHAP SVVVFDDLDS IVAASSESEA SQPSSSSAVL AEYFADIMDE YEEKRRNTCG
0701: IGPVAFIACA QSLTNLPQKL TSSGRFDFHV KLSAPATTER GALLKHIIQK RSLQCSDDTL LDIASKCDGY DAYDLEILVD RSVHAATARF LSSDLAVGSQ
0801: EKPVLFQDDF LRAMHEFVPV AMRDITKPAA DGGRSGWEDV GGLNDIRNAI IEMIELPSKF PNIFAQAPLR MRSNVLLYGP PGCGKTHIVG AAAAACSLRF
0901: ISVKGPELLN KYIGASEQAV RDIFSKAAAA APCLLFFDEF DSIAPKRGHD NTGVTDRVVN QFLTELDGVE VLTGVFVFAA TSRPDLLDAA LLRPGRLDRL
1001: LFCDFPSQHE RSEILSVLSR KLPLASDVDL DVVARLTEGF SGADLQALLS DAQLEAVHDL LDSENAGKPD KKPVISDALL KSIASKAKSS VSDAEKQRLY
1101: DIYSQFLDSK RSVAAQSRDA KGKRATLA
0001: MSRNRQIIIP DDVMETEAVV NTVAGVDCFV SLPRQLLHAL QSTSSSPLPP LLPVELRSGD RRWSVAWSGS SSSSSAIEIA RVFAESISLP DGTVVKVRVL
0101: PNVPKATLVT VEPETEDDWE VLELNAELAE AAILSQVRIL HETMKFPLWL HDRTVIRFSV VSTFPSKGVV QLVPGTEVAV APKRRDRNLK AKKSQEKECN
0201: NVKALLRVQE TDRSAFHEAD VKGFELRVAL TSIAYIHPET AKKHSLESLQ LISVSPRIPL KGSAKKDEAL NMKNSEASKV AENGTSSAKK EPRQAILRLV
0301: FSDLAAKGHL MMVESLRLYL GAGLHSWVYL RGCNVNEDKE IPALSLSPCV FKISENEKVL DKGTDRLGNN NSVRKSSHPP SGLSTYVDVV DWSVHDKVVT
0401: ALSSEGLHDE GNHDKNKKGL EYLTRLWSLA QLDAMASVTG VDVSSLIVGR ETFFHFEVRG LESYKSIDGQ PSVNDRWESG KKDKHTPLEI LYVMTVSDES
0501: LLGDKFAGYD LSLDRSEKSD NVVHIEPVLE KMNLGEPIYL KSAKETHCNK GVSPDISSLT WMGPIVSDVI KRMTVLLSPA AGMWFSKFKI PSPGHILIYG
0601: PPGSGKTILA RAAAKYFEEQ KDLLAHVILV SCSTLALEKV QHIHHVLSSV IAEGLEHAPS VIILDDLDSI ISSSSDTEGT QASVGVTMLT KFLTDVIDDY
0701: GEYRNSSCGI GPLAFVASVQ SLEQIPQTLS SSGRFDFHVQ LAAPATSERG AILKHEIQKR LLDCSEDILL NLAAKCEGYD AYDLEILVDR AVHAAIGRHL
0801: PLESNISKYN LVKEDFTRAM HDFVPVAMRD ITKSASEGGR LGWEDVGGVT DIKNAIKEMI ELPSKFPKIF AKSPLRLRSN VLLYGPPGCG KTHIVGAAAA
0901: ACSLRFISVK GPELLNKYIG ASEQAVRDIF SKAAAAAPCI LFFDEFDSIA PKRGHDNTGV TDRVVNQFLT ELDGVEVLTG VFVFAATSRP DLLDPALLRP
1001: GRLDRLLLCD FPSPPERLEI LTVLSRKLLM ADDIDLEPIA LMTEGFSGAD LQALLSDAQL AAVHEYLNRE DKPETGTTPI ITDPLLKSIA SKTKPSVSET
1101: EKQKLYDIYS QFLDSRKSSR EAKGKRATLA
0101: PNVPKATLVT VEPETEDDWE VLELNAELAE AAILSQVRIL HETMKFPLWL HDRTVIRFSV VSTFPSKGVV QLVPGTEVAV APKRRDRNLK AKKSQEKECN
0201: NVKALLRVQE TDRSAFHEAD VKGFELRVAL TSIAYIHPET AKKHSLESLQ LISVSPRIPL KGSAKKDEAL NMKNSEASKV AENGTSSAKK EPRQAILRLV
0301: FSDLAAKGHL MMVESLRLYL GAGLHSWVYL RGCNVNEDKE IPALSLSPCV FKISENEKVL DKGTDRLGNN NSVRKSSHPP SGLSTYVDVV DWSVHDKVVT
0401: ALSSEGLHDE GNHDKNKKGL EYLTRLWSLA QLDAMASVTG VDVSSLIVGR ETFFHFEVRG LESYKSIDGQ PSVNDRWESG KKDKHTPLEI LYVMTVSDES
0501: LLGDKFAGYD LSLDRSEKSD NVVHIEPVLE KMNLGEPIYL KSAKETHCNK GVSPDISSLT WMGPIVSDVI KRMTVLLSPA AGMWFSKFKI PSPGHILIYG
0601: PPGSGKTILA RAAAKYFEEQ KDLLAHVILV SCSTLALEKV QHIHHVLSSV IAEGLEHAPS VIILDDLDSI ISSSSDTEGT QASVGVTMLT KFLTDVIDDY
0701: GEYRNSSCGI GPLAFVASVQ SLEQIPQTLS SSGRFDFHVQ LAAPATSERG AILKHEIQKR LLDCSEDILL NLAAKCEGYD AYDLEILVDR AVHAAIGRHL
0801: PLESNISKYN LVKEDFTRAM HDFVPVAMRD ITKSASEGGR LGWEDVGGVT DIKNAIKEMI ELPSKFPKIF AKSPLRLRSN VLLYGPPGCG KTHIVGAAAA
0901: ACSLRFISVK GPELLNKYIG ASEQAVRDIF SKAAAAAPCI LFFDEFDSIA PKRGHDNTGV TDRVVNQFLT ELDGVEVLTG VFVFAATSRP DLLDPALLRP
1001: GRLDRLLLCD FPSPPERLEI LTVLSRKLLM ADDIDLEPIA LMTEGFSGAD LQALLSDAQL AAVHEYLNRE DKPETGTTPI ITDPLLKSIA SKTKPSVSET
1101: EKQKLYDIYS QFLDSRKSSR EAKGKRATLA
Arabidopsis Description
PEX1Peroxisome biogenesis protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.