Factsheet for Solyc06g063140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0784700-00	Rice	cytosol	43.59	99.47
Solyc03g123730.2.1	Tomato	nucleus	98.6	98.83
GSMUA_AchrUn_...	Banana	cytosol	40.79	98.31
KRH47728	Soybean	cytosol, nucleus	97.2	97.89
KRH06311	Soybean	cytosol	97.2	97.89
KRG97280	Soybean	cytosol, nucleus	96.97	97.65
AT1G53750.1	Thale cress	cytosol	96.74	97.42
CDY24076	Canola	cytosol	96.5	97.18
CDY36602	Canola	cytosol	96.5	97.18
Bra039688.1-P	Field mustard	cytosol	96.27	96.95
CDY30665	Canola	cytosol	96.27	96.95
CDY25685	Canola	cytosol	95.57	96.24
CDY02494	Canola	cytosol	95.57	96.24
Bra030922.1-P	Field mustard	cytosol	95.57	96.24
CDX74842	Canola	cytosol	91.38	95.15
CDY20470	Canola	cytosol, plasma membrane	94.17	94.84
Bra040569.1-P	Field mustard	cytosol	94.64	93.76
CDY08201	Canola	cytosol	75.29	90.99
VIT_11s0016g00230.t01	Wine grape	cytosol	79.02	79.76
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	20.75	46.84
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	44.99	46.28
Solyc05g018590.2.1	Tomato	nucleus	44.76	46.04
Solyc01g109940.2.1	Tomato	nucleus	38.69	41.71
Solyc10g054040.1.1	Tomato	cytosol, unclear	38.23	41.1
Solyc01g099760.2.1	Tomato	nucleus, plastid	38.93	39.48
Solyc06g082630.2.1	Tomato	cytosol, plastid	36.6	37.92
Solyc06g082660.2.1	Tomato	cytosol, nucleus	36.6	37.92
Solyc06g083620.2.1	Tomato	nucleus, plastid	38.69	37.39
Solyc05g012190.2.1	Tomato	cytosol	26.34	18.49
Solyc06g074980.2.1	Tomato	nucleus	32.4	17.27
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	32.17	17.14
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	32.17	17.08
Solyc09g008070.2.1	Tomato	cytosol, unclear	32.17	17.08
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	32.4	16.73
Solyc01g068330.2.1	Tomato	nucleus	28.21	14.74
Solyc10g078320.1.1	Tomato	nucleus	30.77	13.37
Solyc06g008730.2.1	Tomato	cytosol	28.21	13.02
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	24.24	9.22

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595
GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	UniProt:K4C745	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF60	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc06g063140.2	EnsemblPlants:Solyc06g063140.2.1	TIGRFAMs:TIGR01242	UniParc:UPI0002766B49	:	:

Description

No Description!

Coordinates

chr6:+:39882139..39888573

Molecular Weight (calculated)

47859.0 Da

IEP (calculated)

5.707

GRAVY (calculated)

-0.387

Length

429 amino acids

Sequence
(BLAST)

001: MAPAATDIED EIKDEKNPPP LDEDDIALLK TYGLGPYSTS IKKAEKEIKD MAKKINDLCG IKESDTGLAA PSQWDLVSDK QMMQEEQPLQ VARCTKIISP
101: NTEDAKYVIN VKQIAKFVVG LGDKVSPTDI EEGMRVGVDR NKYQIQIPLP PKIDPSVTMM TVEEKPDVTY NDVGGCKEQI EKMREVVELP MLHPEKFVKL
201: GIDPPKGVLC YGPPGTGKTL LARAVANRTD ACFIRVIGSE LVQKYVGEGA RMVRELFQMA RSKKACIVFF DEVDAIGGAR FDDGVGGDNE VQRTMLEIVN
301: QLDGFDARGN IKVLMATNRP DTLDPALLRP GRLDRKVEFG LPDLESRTQI FKIHTRTMNC ERDIRFELLA RLCPNSTGAD IRSVCTEAGM YAIRARRKTV
401: TEKDFLDAVN KVIKGYQKFS ATPKYMVYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.