Factsheet for GSMUA_AchrUn_randomP26560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0784700-00	Rice	cytosol	98.88	93.62
Bra005023.1-P	Field mustard	cytosol	97.19	72.38
GSMUA_Achr8P16830_001	Banana	cytosol	99.44	41.65
GSMUA_AchrUn_...	Banana	cytosol	98.88	41.41
KRH47728	Soybean	cytosol, nucleus	98.31	41.08
KRH06311	Soybean	cytosol	98.31	41.08
KRG97280	Soybean	cytosol, nucleus	98.31	41.08
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	98.31	40.79
VIT_11s0016g00230.t01	Wine grape	cytosol	85.96	36.0
KRH06953	Soybean	cytosol	52.81	34.81
CDY30663	Canola	cytosol	80.9	33.33
GSMUA_Achr6P12250_001	Banana	cytosol	44.94	26.4
AT1G53780.2	Thale cress	cytosol	90.45	25.97
GSMUA_Achr11P...	Banana	cytosol	44.94	24.54
GSMUA_Achr7P09950_001	Banana	cytosol	54.49	24.07
GSMUA_Achr5P13290_001	Banana	cytosol	29.21	23.64
GSMUA_Achr10P...	Banana	cytosol	54.49	23.1
GSMUA_AchrUn_...	Banana	cytosol	50.56	22.44
GSMUA_Achr4P03720_001	Banana	cytosol	50.0	22.36
GSMUA_Achr9P13230_001	Banana	cytosol	50.0	21.98
GSMUA_Achr5P04520_001	Banana	cytosol	50.0	21.98
GSMUA_Achr7P17620_001	Banana	cytosol	50.0	21.71
GSMUA_Achr4P05840_001	Banana	cytosol	50.0	21.14
GSMUA_Achr4P05850_001	Banana	cytosol	50.0	20.99
GSMUA_Achr3P00250_001	Banana	cytosol	23.03	20.92
GSMUA_Achr3P04570_001	Banana	cytosol	49.44	20.8
GSMUA_Achr7P21960_001	Banana	cytosol	44.94	16.53
GSMUA_Achr6P11080_001	Banana	plastid	37.08	11.02
GSMUA_Achr6P29120_001	Banana	cytosol	35.39	10.5
GSMUA_Achr4P03560_001	Banana	mitochondrion	35.39	8.06
GSMUA_Achr7P04540_001	Banana	cytosol	34.83	7.85
GSMUA_Achr9P23550_001	Banana	mitochondrion	34.83	7.69
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	34.83	7.66
GSMUA_Achr4P26800_001	Banana	cytosol	34.83	7.66
GSMUA_Achr6P20030_001	Banana	cytosol	32.58	6.0
GSMUA_Achr11P...	Banana	cytosol	28.65	4.55
GSMUA_Achr3P00260_001	Banana	cytosol	4.49	1.64

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP26560_001	EnsemblPlants:GSMUA_AchrUn_randomT26560_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG26560_001	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase
PANTHER:PTHR23073	PANTHER:PTHR23073:SF60	PFAM:PF00004	ScanProsite:PS00674	SUPFAM:SSF52540	UniParc:UPI0002968822
UniProt:M0UCL4	MapMan:35.1	:	:	:	:

Description

26S protease regulatory subunit 7 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG26560_001]

Coordinates

chrchrUn_random:+:130297346..130299518

Molecular Weight (calculated)

20186.5 Da

IEP (calculated)

8.951

GRAVY (calculated)

-0.324

Length

178 amino acids

Sequence
(BLAST)

001: MVRELFQMAR SKKACIVFFD EVDAIGGARF DDGVGGDNEV QRTMLEIVNQ LDGFDARGNI KVLMATNRPD TLDPALLRPG RLDRKVEFGL PDLEGRTQIF
101: KIHTRTMNCE REIRFELLAR LCPNSTGADI RSVCTEAGMF AIRARRKTVT EKDFLDAVNK VIKGYQKFSA TPKYMVYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.