Factsheet for GSMUA_Achr6P12250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G067470.2	Barley	cytosol	68.32	91.19
GSMUA_Achr11P...	Banana	cytosol	97.69	90.8
PGSC0003DMT400006190	Potato	cytosol	97.03	90.18
HORVU2Hr1G107280.1	Barley	cytosol	96.37	78.92
HORVU2Hr1G014000.1	Barley	cytosol	96.04	70.98
TraesCS2D01G083900.1	Wheat	golgi	96.37	70.36
TraesCS2A01G086400.1	Wheat	cytosol	96.37	70.36
KXG39890	Sorghum	cytosol	97.36	70.24
Os02t0325100-01	Rice	plastid	97.03	70.17
TraesCS2B01G100400.1	Wheat	cytosol, plastid	96.04	70.12
TraesCS2D01G476000.1	Wheat	cytosol	95.71	69.54
TraesCS2B01G499600.1	Wheat	cytosol	95.71	69.54
Zm00001d050616_P002	Maize	plastid	97.36	67.97
TraesCS2A01G475900.1	Wheat	cytosol	95.71	67.92
GSMUA_Achr7P21960_001	Banana	cytosol	98.02	61.36
Zm00001d015886_P002	Maize	cytosol	80.53	45.02
GSMUA_AchrUn_...	Banana	cytosol	26.4	44.94
GSMUA_Achr4P05840_001	Banana	cytosol	53.8	38.72
GSMUA_Achr4P05850_001	Banana	cytosol	53.8	38.44
GSMUA_Achr7P09950_001	Banana	cytosol	48.18	36.23
GSMUA_Achr4P03720_001	Banana	cytosol	45.87	34.92
GSMUA_Achr9P13230_001	Banana	cytosol	46.53	34.81
GSMUA_Achr10P...	Banana	cytosol	48.18	34.76
GSMUA_Achr5P04520_001	Banana	cytosol	46.2	34.57
GSMUA_AchrUn_...	Banana	cytosol	45.21	34.16
GSMUA_Achr8P16830_001	Banana	cytosol	47.52	33.88
GSMUA_AchrUn_...	Banana	cytosol	47.52	33.88
GSMUA_Achr7P17620_001	Banana	cytosol	45.21	33.41
GSMUA_Achr3P04570_001	Banana	cytosol	44.88	32.15
GSMUA_Achr5P13290_001	Banana	cytosol	18.81	25.91
GSMUA_Achr3P00250_001	Banana	cytosol	14.19	21.94
GSMUA_Achr6P11080_001	Banana	plastid	33.99	17.2
GSMUA_Achr6P29120_001	Banana	cytosol	33.99	17.17
GSMUA_Achr7P04540_001	Banana	cytosol	35.64	13.67
GSMUA_Achr4P26800_001	Banana	cytosol	36.3	13.6
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	36.3	13.6
GSMUA_Achr4P03560_001	Banana	mitochondrion	34.98	13.55
GSMUA_Achr9P23550_001	Banana	mitochondrion	35.64	13.4
GSMUA_Achr6P20030_001	Banana	cytosol	32.67	10.25
GSMUA_Achr3P00260_001	Banana	cytosol	16.17	10.04
GSMUA_Achr11P...	Banana	cytosol	30.36	8.21

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163
GO:GO:0036402	GO:GO:1901800	EnsemblPlantsGene:GSMUA_Achr6G12250_001	EnsemblPlants:GSMUA_Achr6P12250_001	EnsemblPlants:GSMUA_Achr6T12250_001	UniProt:M0T6C3
InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC4	PANTHER:PTHR23073	PANTHER:PTHR23073:SF8
SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI000294A3D2	:	:

Description

26S protease regulatory subunit 6B homolog [Source:GMGC_GENE;Acc:GSMUA_Achr6G12250_001]

Coordinates

chr6:-:8184213..8188923

Molecular Weight (calculated)

33992.8 Da

IEP (calculated)

5.939

GRAVY (calculated)

-0.360

Length

303 amino acids

Sequence
(BLAST)

001: MEMVDQNNAI PSASVALHRH SNALVDVLPP EADSSISLLS QSEKPDVTYN DIGGYDTQKQ EIREAVELPL THHELYKQIG IDPPRGVLLY GPPGTGKTML
101: AKAVAHHTTA AFIRVVGSEF VQKYLGEGPR MVRDVFRLAK ENAPAIIFID EVDAIATARF DAQTGADREV QRILMELLNQ MDGFDQTVNV KVIMATNRAD
201: TLDPALLRPG RLDRKIEFPL PDRRQKRLVF QVCTAKMNLS DEVDLEDYVS RPDKISAAEI AAICQEAGMH AVRKNRYVIL PKDFEKGYRT NVKKPETDFD
301: FYK

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.