Factsheet for GSMUA_Achr7P21960_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	66.53	98.77
GSMUA_Achr6P12250_001	Banana	cytosol	61.36	98.02
CDY58566	Canola	cytosol	77.69	93.07
CDY43865	Canola	cytosol	77.69	93.07
CDY32995	Canola	cytosol, extracellular	77.69	93.07
CDY32714	Canola	cytosol	77.69	93.07
CDY02806	Canola	cytosol	77.69	93.07
CDX88666	Canola	cytosol	77.69	93.07
Bra020378.1-P	Field mustard	cytosol	77.69	93.07
Bra002662.1-P	Field mustard	cytosol	77.69	93.07
Solyc06g082660.2.1	Tomato	cytosol, nucleus	79.34	92.75
AT5G58290.1	Thale cress	cytosol	78.1	92.65
Bra006775.1-P	Field mustard	cytosol	74.79	92.58
PGSC0003DMT400053010	Potato	cytosol	78.93	92.49
Solyc06g082630.2.1	Tomato	cytosol, plastid	78.93	92.27
PGSC0003DMT400078301	Potato	cytosol	78.72	92.03
KRG98107	Soybean	cytosol	80.17	91.94
KRH30674	Soybean	cytosol, nucleus	78.31	91.77
VIT_06s0004g08220.t01	Wine grape	cytosol	79.13	91.63
KRH30673	Soybean	cytosol, nucleus	79.55	91.02
GSMUA_AchrUn_...	Banana	cytosol	16.53	44.94
GSMUA_Achr4P05840_001	Banana	cytosol	37.19	42.76
GSMUA_Achr4P05850_001	Banana	cytosol	37.19	42.45
GSMUA_Achr7P09950_001	Banana	cytosol	32.44	38.96
GSMUA_Achr4P03720_001	Banana	cytosol	31.82	38.69
GSMUA_Achr9P13230_001	Banana	cytosol	32.02	38.27
GSMUA_AchrUn_...	Banana	cytosol	31.61	38.15
GSMUA_Achr5P04520_001	Banana	cytosol	31.82	38.02
GSMUA_Achr10P...	Banana	cytosol	32.85	37.86
GSMUA_Achr7P17620_001	Banana	cytosol	31.82	37.56
GSMUA_Achr8P16830_001	Banana	cytosol	32.23	36.71
GSMUA_AchrUn_...	Banana	cytosol	32.23	36.71
GSMUA_Achr3P04570_001	Banana	cytosol	31.2	35.7
GSMUA_Achr5P13290_001	Banana	cytosol	11.78	25.91
GSMUA_Achr3P00250_001	Banana	cytosol	8.88	21.94
GSMUA_Achr6P11080_001	Banana	plastid	23.76	19.2
GSMUA_Achr6P29120_001	Banana	cytosol	23.55	19.0
GSMUA_Achr7P04540_001	Banana	cytosol	26.03	15.95
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	26.45	15.82
GSMUA_Achr4P26800_001	Banana	cytosol	26.24	15.7
GSMUA_Achr9P23550_001	Banana	mitochondrion	25.41	15.26
GSMUA_Achr4P03560_001	Banana	mitochondrion	24.59	15.22
GSMUA_Achr3P00260_001	Banana	cytosol	11.78	11.68
GSMUA_Achr6P20030_001	Banana	cytosol	22.73	11.39
GSMUA_Achr11P...	Banana	cytosol	22.31	9.63

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009506	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163
GO:GO:0030312	GO:GO:0036402	GO:GO:1901800	EnsemblPlantsGene:GSMUA_Achr7G21960_001	EnsemblPlants:GSMUA_Achr7P21960_001	EnsemblPlants:GSMUA_Achr7T21960_001
UniProt:M0TJN2	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC4	PANTHER:PTHR23073
PANTHER:PTHR23073:SF8	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI000296A8E1	SEG:seg

Description

26S protease regulatory subunit 6B homolog [Source:GMGC_GENE;Acc:GSMUA_Achr7G21960_001]

Coordinates

chr7:+:24571911..24583829

Molecular Weight (calculated)

54306.5 Da

IEP (calculated)

8.532

GRAVY (calculated)

-0.343

Length

484 amino acids

Sequence
(BLAST)

001: MLGKLKYIVT QVEDQTLTNT PDTRVTSCRA RQLLLRAGHV TSVVKKPRFS SQSSFRSRKG KPSQYSTALM AASAMVIDPR KPSVSALPRV DALLSPVPVA
101: DEEDDLYGRL KSLQRQIEFI DIQEEYVKDE LKNLKRELLR AQEEVKRIQS VPLVIGQFME MVDQNNGIVG STTGSNYYVR ILSTINRELL KPSASVALHR
201: HSNALVDVLP PEADSSISLL SQSEKPDVTY NDIGGCDIQK QEIREAVELP LTHHDLYKQI GIDPPRGVLL YGPPGTGKTM LAKAVAHHTT AAFIRVVGSE
301: FVQKYLGEGP RMVRDVFRLA KENAPAIIFI DEVDAIATAR FDAQTGADRE VQRILMELLN QMDGFDQTVN VKVIMATNRA DTLDPALLRP GRLDRKIEFP
401: LPDRRQKRLV FQVCTAKMNL SDEVDLEDYV SRPDKISAAE IAAICQEAGM HAVRKNRYVI LPKDFEKGYR ANVKKPDTDF DFYK

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.