Factsheet for Solyc06g082660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082630.2.1	Tomato	cytosol, plastid	99.52	99.52
PGSC0003DMT400078301	Potato	cytosol	99.03	99.03
PGSC0003DMT400053010	Potato	cytosol	97.1	97.34
HORVU2Hr1G107280.1	Barley	cytosol	84.3	94.32
CDY02806	Canola	cytosol	91.06	93.32
CDY32714	Canola	cytosol	91.06	93.32
Bra020378.1-P	Field mustard	cytosol	91.06	93.32
Bra002662.1-P	Field mustard	cytosol	90.82	93.07
CDX88666	Canola	cytosol	90.82	93.07
CDY43865	Canola	cytosol	90.82	93.07
CDY32995	Canola	cytosol, extracellular	90.82	93.07
CDY58566	Canola	cytosol	90.82	93.07
Bra006775.1-P	Field mustard	cytosol	87.44	92.58
AT5G58290.1	Thale cress	cytosol	91.06	92.4
KRH30674	Soybean	cytosol, nucleus	91.79	92.01
VIT_06s0004g08220.t01	Wine grape	cytosol	92.75	91.87
HORVU2Hr1G014000.1	Barley	cytosol	89.13	90.0
HORVU3Hr1G067470.2	Barley	cytosol	49.28	89.87
TraesCS2D01G083900.1	Wheat	golgi	89.37	89.16
TraesCS2A01G086400.1	Wheat	cytosol	89.37	89.16
TraesCS2B01G100400.1	Wheat	cytosol, plastid	89.13	88.92
KXG39890	Sorghum	cytosol	90.1	88.81
Os02t0325100-01	Rice	plastid	89.61	88.54
TraesCS2D01G476000.1	Wheat	cytosol	89.13	88.49
TraesCS2B01G499600.1	Wheat	cytosol	88.89	88.25
TraesCS2A01G475900.1	Wheat	cytosol	89.61	86.89
Zm00001d050616_P002	Maize	plastid	90.1	85.94
EER91182	Sorghum	cytosol	83.57	82.38
GSMUA_Achr7P21960_001	Banana	cytosol	92.75	79.34
Zm00001d015886_P002	Maize	cytosol	77.78	59.41
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	19.81	43.16
Solyc06g083620.2.1	Tomato	nucleus, plastid	44.93	41.89
Solyc01g109940.2.1	Tomato	nucleus	37.68	39.2
Solyc05g018590.2.1	Tomato	nucleus	39.37	39.09
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	39.37	39.09
Solyc10g054040.1.1	Tomato	cytosol, unclear	36.23	37.59
Solyc01g099760.2.1	Tomato	nucleus, plastid	37.68	36.88
Solyc03g123730.2.1	Tomato	nucleus	37.92	36.68
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	37.92	36.6
Solyc05g012190.2.1	Tomato	cytosol	28.26	19.15
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	29.95	15.4
Solyc06g074980.2.1	Tomato	nucleus	29.95	15.4
Solyc09g008070.2.1	Tomato	cytosol, unclear	29.47	15.1
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	29.47	15.1
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	29.71	14.8
Solyc01g068330.2.1	Tomato	nucleus	28.74	14.49
Solyc10g078320.1.1	Tomato	nucleus	28.26	11.85
Solyc06g008730.2.1	Tomato	cytosol	26.33	11.73
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	24.64	9.04

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595
GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	UniProt:K4CAC1	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC4	PANTHER:PTHR23073	PANTHER:PTHR23073:SF8	SMART:SM00382
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc06g082660.2	EnsemblPlants:Solyc06g082660.2.1	TIGRFAMs:TIGR01242	UniParc:UPI00027659CA	:

Description

No Description!

Coordinates

chr6:-:48411223..48416426

Molecular Weight (calculated)

46632.0 Da

IEP (calculated)

5.707

GRAVY (calculated)

-0.391

Length

414 amino acids

Sequence
(BLAST)

001: MAAAMVLDPK PSPELPATRP DLSSHDVPSE NGEDDLYARL KSLQRQLEFI EIQEEYVKDE LKNLRREHLR AQEEVKRIQS VPLVIGQFME MIDQNNAIVG
101: STTGSNYYVR ILSTINRELL KPSASVALHR HSNALVDVLP PEADSSISLL SQSEKPDVTY NDIGGCDIQK QEIREAVELP LTHHELYKQI GIDPPRGVLL
201: YGPPGTGKTM LAKAVAHHTT AAFIRVVGSE FVQKYLGEGP RMVRDVFRLA KENAPAIIFI DEVDAIATAR FDAQTGADRE VQRILMELLN QMDGFDQTVN
301: VKVIMATNRA DTLDPALLRP GRLDRKIEFP LPDRRQKRLV FQVCTAKMNL GDEVDLEDYV SRPDKISAAE IAAICQEAGM HAVRKNRYVI LPKDFEKGYR
401: TNVKKPDTDF EFYK

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.