Factsheet for Solyc10g054040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109940.2.1	Tomato	nucleus	86.22	86.43
VIT_03s0038g04350.t01	Wine grape	cytosol	85.46	85.46
GSMUA_AchrUn_...	Banana	cytosol	85.71	85.29
TraesCS6D01G149500.1	Wheat	cytosol	76.19	84.44
GSMUA_Achr4P03720_001	Banana	cytosol	83.71	83.92
TraesCS6A01G162700.2	Wheat	cytosol, golgi	83.71	83.5
EES06471	Sorghum	cytosol	83.46	83.25
Zm00001d053649_P002	Maize	cytosol, mitochondrion	83.46	83.25
TraesCS6B01G188500.1	Wheat	cytosol	83.46	83.25
Os02t0199900-01	Rice	nucleus, plasma membrane	83.46	83.25
Zm00001d015788_P001	Maize	plasma membrane	83.21	83.0
TraesCS7D01G375500.1	Wheat	cytosol	82.96	82.75
TraesCS7B01G280400.1	Wheat	cytosol, unclear	82.96	82.75
TraesCS7A01G378600.1	Wheat	cytosol	82.96	82.75
GSMUA_Achr7P17620_001	Banana	cytosol	84.71	82.44
Os06t0607800-01	Rice	nucleus	82.71	82.29
Zm00001d046539_P002	Maize	cytosol, mitochondrion	81.95	82.16
EER88627	Sorghum	cytosol	81.45	81.66
HORVU6Hr1G032570.5	Barley	cytosol	81.95	79.95
HORVU7Hr1G090380.3	Barley	cytosol	82.96	75.92
TraesCS7D01G532000.1	Wheat	cytosol	72.18	72.36
TraesCS7B01G468900.1	Wheat	cytosol	71.18	71.36
TraesCS7A01G545700.1	Wheat	cytosol	71.18	71.36
HORVU7Hr1G119300.13	Barley	cytosol	71.18	70.65
KRH51488	Soybean	mitochondrion	66.42	62.65
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	21.05	44.21
Solyc05g018590.2.1	Tomato	nucleus	43.36	41.49
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	43.36	41.49
Solyc03g123730.2.1	Tomato	nucleus	41.1	38.32
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	41.1	38.23
Solyc06g083620.2.1	Tomato	nucleus, plastid	41.6	37.39
Solyc06g082630.2.1	Tomato	cytosol, plastid	37.84	36.47
Solyc06g082660.2.1	Tomato	cytosol, nucleus	37.59	36.23
Solyc01g099760.2.1	Tomato	nucleus, plastid	38.1	35.93
Solyc05g012190.2.1	Tomato	cytosol	27.57	18.0
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	33.58	16.58
Solyc06g074980.2.1	Tomato	nucleus	33.33	16.52
Solyc09g008070.2.1	Tomato	cytosol, unclear	33.33	16.46
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	32.83	16.27
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	32.33	15.52
Solyc01g068330.2.1	Tomato	nucleus	29.57	14.37
Solyc10g078320.1.1	Tomato	nucleus	30.83	12.46
Solyc06g008730.2.1	Tomato	cytosol	25.81	11.09
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	28.07	9.93

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595
GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	UniProt:K4D102	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF58	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc10g054040.1	EnsemblPlants:Solyc10g054040.1.1	TIGRFAMs:TIGR01242	UniParc:UPI000276A892	:	:

Description

No Description!

Coordinates

chr10:-:54525819..54533162

Molecular Weight (calculated)

44737.4 Da

IEP (calculated)

7.617

GRAVY (calculated)

-0.281

Length

399 amino acids

Sequence
(BLAST)

001: MTSESENVLR RRTAYDEFRK KQLEQKELDA QLWAVKENLR AAKKEYGKTE DDLKLLQSVG QIIGEVLRPL DDKRMIVKVG CGSRYVVGCC SKMDKENLTS
101: GTRVVLDMST LTIMRALPHE VHPMVHNMLH EDPGNISYSA VGGLSDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIARNVDAN
201: FLKIVSSAII DKYIGESARL IREMFNYARD HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDHIGKVK VIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NELSRIEILK IHAAGIAKHG DIDYEAVVKL AEGFNGADLR NVCTEAGISA VRAERDYVIH VDFMKAVRKL NEAKKLESSV HYAADIGKE

Best Arabidopsis Sequence Match ( AT5G43010.1 )
(BLAST)

001: MTDVDESVRR RTAAVSEYRK KLLQHKELES RVRTARENLR GAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDNLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMDILK IHAAGIAKHG EIDYEAIVKL AEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4A26S proteasome regulatory subunit 10B homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.