Factsheet for Zm00001d053649_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018409_P007
Zm00001d037481_P003
Zm00001d045163_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43010.1	Zm00001d018409_P007	AT3G05530.1	21798944
AT5G43010.1	Zm00001d037481_P003	AT3G05530.1	21798944
AT5G43010.1	Zm00001d045163_P001	AT3G05530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06471	Sorghum	cytosol	99.75	99.75
Zm00001d015788_P001	Maize	plasma membrane	99.25	99.25
TraesCS6D01G149500.1	Wheat	cytosol	88.5	98.33
Os02t0199900-01	Rice	nucleus, plasma membrane	98.25	98.25
TraesCS6B01G188500.1	Wheat	cytosol	97.25	97.25
TraesCS6A01G162700.2	Wheat	cytosol, golgi	97.25	97.25
VIT_18s0001g13090.t01	Wine grape	cytosol	93.0	93.47
KRH61120	Soybean	endoplasmic reticulum	92.75	93.22
KRH51796	Soybean	cytosol	92.75	93.22
Zm00001d046539_P002	Maize	cytosol, mitochondrion	92.5	92.96
KRH05868	Soybean	cytosol, nucleus	92.5	92.73
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	92.25	92.48
VIT_03s0038g04350.t01	Wine grape	cytosol	92.0	92.23
Solyc01g109940.2.1	Tomato	nucleus	91.75	92.21
GSMUA_AchrUn_...	Banana	cytosol	92.25	92.02
PGSC0003DMT400079514	Potato	cytosol	91.5	91.96
GSMUA_Achr4P03720_001	Banana	cytosol	91.5	91.96
HORVU6Hr1G032570.5	Barley	cytosol	93.75	91.69
AT1G45000.1	Thale cress	cytosol	91.25	91.48
Bra033655.1-P	Field mustard	cytosol	90.5	90.73
CDY22373	Canola	cytosol	90.5	90.73
CDX71534	Canola	cytosol	90.5	90.73
Bra035338.1-P	Field mustard	cytosol	90.25	90.48
CDY02428	Canola	cytosol, extracellular	90.25	90.48
AT5G43010.1	Thale cress	cytosol	90.0	90.23
CDY25226	Canola	cytosol	90.0	90.23
GSMUA_Achr7P17620_001	Banana	cytosol	92.25	90.0
Solyc10g054040.1.1	Tomato	cytosol, unclear	83.25	83.46
CDY20370	Canola	cytosol	45.0	66.91
KRH51488	Soybean	mitochondrion	67.75	64.07
CDY39032	Canola	cytosol	38.5	61.35
KRH00031	Soybean	plastid	51.75	60.0
CDY39033	Canola	cytosol	60.0	59.11
CDY20371	Canola	cytosol, plastid	59.5	54.09
Zm00001d045163_P001	Maize	mitochondrion	18.75	42.61
Zm00001d053616_P002	Maize	cytosol	43.0	40.76
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	43.0	40.76
Zm00001d018309_P003	Maize	cytosol	41.0	38.5
Bra008198.1-P	Field mustard	cytosol	60.0	38.22
Zm00001d028801_P001	Maize	cytosol, extracellular	41.25	37.0
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	39.75	36.98
Zm00001d050616_P002	Maize	plastid	40.0	36.87
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	40.75	36.47
Zm00001d052078_P003	Maize	cytosol	41.0	35.89
Zm00001d007215_P001	Maize	cytosol	40.5	34.91
Zm00001d018409_P007	Maize	cytosol	39.0	34.82
Zm00001d032117_P001	Maize	cytosol	23.75	29.69
Zm00001d015886_P002	Maize	cytosol	31.5	23.25
Zm00001d009592_P001	Maize	cytosol	14.75	22.52
Zm00001d025776_P002	Maize	cytosol	30.75	21.65
Zm00001d027707_P001	Maize	cytosol, plasma membrane	34.0	16.85
Zm00001d048409_P001	Maize	cytosol	33.75	16.79
Zm00001d032859_P006	Maize	plasma membrane	33.75	16.67
Zm00001d014124_P001	Maize	cytosol, plasma membrane	33.75	16.65
Zm00001d035913_P002	Maize	cytosol, mitochondrion	30.0	16.37
Zm00001d045566_P001	Maize	cytosol, mitochondrion	30.25	15.76
Zm00001d050303_P001	Maize	cytosol	31.0	15.7
Zm00001d022096_P002	Maize	mitochondrion	28.75	15.19
Zm00001d049140_P006	Maize	cytosol, plastid	30.25	12.04
Zm00001d002462_P010	Maize	mitochondrion	28.25	10.63
Zm00001d049974_P004	Maize	peroxisome	25.25	9.06
Zm00001d002717_P001	Maize	mitochondrion	7.0	6.86
Zm00001d053999_P001	Maize	cytosol	6.5	6.33
Zm00001d027244_P001	Maize	cytosol	5.0	5.46
Zm00001d033491_P001	Maize	cytosol, plasma membrane, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100383510	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	ProteinID:AQK60008.1	ProteinID:AQK60011.1	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EMBL:BT067445
UniProt:C0PGM6	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	GO:GO:0036402	GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	InterPro:PSMC6	PANTHER:PTHR23073	PANTHER:PTHR23073:SF59	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR01242	UniParc:UPI000189D0FD	EnsemblPlantsGene:Zm00001d053649	EnsemblPlants:Zm00001d053649_P002	EnsemblPlants:Zm00001d053649_T002	SEG:seg

Description

26S protease regulatory subunit S10B homolog B

Coordinates

chr4:+:238178510..238183266

Molecular Weight (calculated)

44518.9 Da

IEP (calculated)

7.541

GRAVY (calculated)

-0.317

Length

400 amino acids

Sequence
(BLAST)

001: MADGEDAAAA RRRAAITDYR KKLLNCRELE SRVGTVRESL KTAKKDFTKT EDDLKSLQSV GQIIGEVLRP LDNERFIVKA SSGPRYVVGC RSKVDKEKLT
101: SGTRVVLDMT TLTIMRTLPR EVDPVVYNML HEDPGNVSYS AVGGLSDQIR ELRESIELPL MNPELFLRVG IKPPKGVLLY GPPGTGKTLL ARAIASNIDA
201: NFLKIVSSAI IDKYIGESAR LIREMFGYAR DHQPCIIFMD EIDAIGGRRF SEGTSADREI QRTLMELLNQ LDGFDELGKV KMIMATNRPD VLDPALLRPG
301: RLDRKIEIPL PNEQSRMEVL KIHAAGIAKH GEIDYEAVVK LAEGFNGADL RNVCTEAGMA AIRAERDYVV HEDFMKAVRK LNDAKKLESS AHYSADFGKE

Best Arabidopsis Sequence Match ( AT1G45000.1 )
(BLAST)

001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.