Factsheet for Bra035338.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001152.1-P
Bra039431.1-P
Bra040214.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43010.1	Bra001152.1-P	AT3G05530.1	21798944
AT5G43010.1	Bra039431.1-P	AT3G05530.1	21798944
AT5G43010.1	Bra040214.1-P	AT3G05530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02428	Canola	cytosol, extracellular	100.0	100.0
CDY25226	Canola	cytosol	99.75	99.75
Bra033655.1-P	Field mustard	cytosol	99.25	99.25
AT5G43010.1	Thale cress	cytosol	97.74	97.74
KRH61120	Soybean	endoplasmic reticulum	93.98	94.22
KRH51796	Soybean	cytosol	93.98	94.22
VIT_18s0001g13090.t01	Wine grape	cytosol	93.73	93.97
KRH05868	Soybean	cytosol, nucleus	93.23	93.23
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	92.98	92.98
GSMUA_AchrUn_...	Banana	cytosol	93.23	92.77
TraesCS6D01G149500.1	Wheat	cytosol	81.7	90.56
GSMUA_Achr7P17620_001	Banana	cytosol	92.98	90.49
EES06471	Sorghum	cytosol	90.48	90.25
Zm00001d053649_P002	Maize	cytosol, mitochondrion	90.48	90.25
Os02t0199900-01	Rice	nucleus, plasma membrane	90.23	90.0
TraesCS6B01G188500.1	Wheat	cytosol	89.97	89.75
TraesCS6A01G162700.2	Wheat	cytosol, golgi	89.97	89.75
Zm00001d015788_P001	Maize	plasma membrane	89.97	89.75
GSMUA_Achr4P03720_001	Banana	cytosol	89.22	89.45
Zm00001d046539_P002	Maize	cytosol, mitochondrion	88.97	89.2
Os06t0607800-01	Rice	nucleus	89.47	89.03
EER88627	Sorghum	cytosol	88.47	88.69
TraesCS7A01G378600.1	Wheat	cytosol	88.72	88.5
TraesCS7B01G280400.1	Wheat	cytosol, unclear	88.72	88.5
TraesCS7D01G375500.1	Wheat	cytosol	88.72	88.5
HORVU6Hr1G032570.5	Barley	cytosol	87.22	85.09
HORVU7Hr1G090380.3	Barley	cytosol	88.72	81.19
TraesCS7D01G532000.1	Wheat	cytosol	76.44	76.63
TraesCS7A01G545700.1	Wheat	cytosol	75.44	75.63
TraesCS7B01G468900.1	Wheat	cytosol	74.94	75.13
HORVU7Hr1G119300.13	Barley	cytosol	75.69	75.12
KRH00031	Soybean	plastid	50.38	58.26
Bra005023.1-P	Field mustard	cytosol	31.83	53.14
Bra006529.1-P	Field mustard	cytosol	44.11	42.0
Bra002279.1-P	Field mustard	cytosol	43.61	41.53
Bra030922.1-P	Field mustard	cytosol	41.35	38.73
Bra002662.1-P	Field mustard	cytosol	39.1	38.61
Bra020378.1-P	Field mustard	cytosol	39.1	38.61
Bra039688.1-P	Field mustard	cytosol	41.1	38.5
Bra006775.1-P	Field mustard	cytosol	37.59	38.36
Bra008198.1-P	Field mustard	cytosol	59.4	37.74
Bra011079.1-P	Field mustard	cytosol	41.6	37.47
Bra040569.1-P	Field mustard	cytosol	40.6	37.41
Bra010342.1-P	Field mustard	cytosol	41.6	37.3
Bra039431.1-P	Field mustard	cytosol	38.1	35.85
Bra001152.1-P	Field mustard	cytosol	38.1	35.85
Bra040214.1-P	Field mustard	cytosol	38.1	35.85
Bra024165.1-P	Field mustard	cytosol	28.07	34.67
Bra020079.1-P	Field mustard	cytosol	44.36	24.55
Bra017378.1-P	Field mustard	cytosol	27.32	18.08
Bra029795.1-P	Field mustard	cytosol	33.83	16.69
Bra001297.1-P	Field mustard	cytosol	33.83	16.69
Bra034089.1-P	Field mustard	cytosol	33.83	16.67
Bra003123.1-P	Field mustard	cytosol	33.83	16.67
Bra006978.1-P	Field mustard	cytosol	33.58	16.52
Bra022833.1-P	Field mustard	cytosol	29.82	16.02
Bra000999.1-P	Field mustard	cytosol, mitochondrion	30.83	14.77
Bra005733.1-P	Field mustard	cytosol	34.09	12.32
Bra007262.1-P	Field mustard	plastid	30.08	12.24
Bra009342.1-P	Field mustard	cytosol	28.57	10.17
Bra032565.1-P	Field mustard	mitochondrion	27.07	5.79
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.25	0.45

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra035338	EnsemblPlants:Bra035338.1	EnsemblPlants:Bra035338.1-P	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	UniProt:M4F2N9	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF58	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI000253E5FF	SEG:seg	:	:	:	:

Description

AT5G43010 (E=1e-209) RPT4A | RPT4A; ATPase

Coordinates

chrScaffold000103:-:761915..763923

Molecular Weight (calculated)

44752.2 Da

IEP (calculated)

8.418

GRAVY (calculated)

-0.374

Length

399 amino acids

Sequence
(BLAST)

001: MSDGEEAVRR RTAAVADYRK KLLQHKELES RVRTARENLR GSKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDNLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMDILK IHAAGIAKHG EIEYEAIVKL AEGFNGADLR NICTEAGMFA IRAERDYVIQ EDFMKAVRKL SEAKKLESSS HYNADFGKE

Best Arabidopsis Sequence Match ( AT5G43010.1 )
(BLAST)

001: MTDVDESVRR RTAAVSEYRK KLLQHKELES RVRTARENLR GAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDNLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMDILK IHAAGIAKHG EIDYEAIVKL AEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4A26S proteasome regulatory subunit 10B homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.