Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 4
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os02t0784700-00 | Rice | cytosol | 77.41 | 98.4 |
GSMUA_AchrUn_... | Banana | cytosol | 72.38 | 97.19 |
Bra030922.1-P | Field mustard | cytosol | 99.16 | 55.63 |
Bra039688.1-P | Field mustard | cytosol | 98.74 | 55.4 |
EES01223 | Sorghum | cytosol | 98.74 | 55.4 |
Zm00001d018309_P003 | Maize | cytosol | 98.74 | 55.4 |
EES07646 | Sorghum | cytosol | 98.74 | 55.4 |
PGSC0003DMT400023656 | Potato | cytosol | 99.16 | 55.37 |
PGSC0003DMT400012446 | Potato | cytosol | 98.74 | 55.01 |
TraesCS7A01G156800.1 | Wheat | cytosol | 97.91 | 54.93 |
TraesCS7B01G060900.1 | Wheat | golgi | 97.91 | 54.93 |
TraesCS7D01G157200.1 | Wheat | cytosol | 97.91 | 54.93 |
TraesCSU01G080700.1 | Wheat | cytosol | 97.07 | 54.46 |
HORVU6Hr1G083150.1 | Barley | cytosol | 97.07 | 54.46 |
TraesCS6B01G376500.1 | Wheat | golgi | 97.07 | 54.46 |
TraesCS6D01G326400.1 | Wheat | cytosol | 97.07 | 54.46 |
Bra040569.1-P | Field mustard | cytosol | 97.49 | 53.81 |
HORVU7Hr1G032070.1 | Barley | cytosol | 97.91 | 52.7 |
Zm00001d052078_P003 | Maize | cytosol | 98.74 | 51.64 |
CDY30663 | Canola | cytosol | 85.77 | 47.45 |
AT1G53780.2 | Thale cress | cytosol | 90.38 | 34.84 |
Bra006529.1-P | Field mustard | cytosol | 59.0 | 33.65 |
Bra002279.1-P | Field mustard | cytosol | 58.58 | 33.41 |
Bra033655.1-P | Field mustard | cytosol | 53.14 | 31.83 |
Bra035338.1-P | Field mustard | cytosol | 53.14 | 31.83 |
Bra002662.1-P | Field mustard | cytosol | 50.21 | 29.7 |
Bra020378.1-P | Field mustard | cytosol | 50.21 | 29.7 |
Bra040214.1-P | Field mustard | cytosol | 52.3 | 29.48 |
Bra039431.1-P | Field mustard | cytosol | 52.3 | 29.48 |
Bra001152.1-P | Field mustard | cytosol | 52.3 | 29.48 |
Bra011079.1-P | Field mustard | cytosol | 53.56 | 28.89 |
Bra010342.1-P | Field mustard | cytosol | 53.56 | 28.76 |
Bra006775.1-P | Field mustard | cytosol | 45.61 | 27.88 |
Bra024165.1-P | Field mustard | cytosol | 35.15 | 26.01 |
Bra020079.1-P | Field mustard | cytosol | 58.58 | 19.42 |
Bra008198.1-P | Field mustard | cytosol | 47.28 | 17.99 |
Bra017378.1-P | Field mustard | cytosol | 34.73 | 13.76 |
Bra003123.1-P | Field mustard | cytosol | 41.84 | 12.35 |
Bra029795.1-P | Field mustard | cytosol | 41.42 | 12.24 |
Bra001297.1-P | Field mustard | cytosol | 41.42 | 12.24 |
Bra034089.1-P | Field mustard | cytosol | 41.42 | 12.22 |
Bra006978.1-P | Field mustard | cytosol | 41.42 | 12.21 |
Bra022833.1-P | Field mustard | cytosol | 36.4 | 11.71 |
Bra000999.1-P | Field mustard | cytosol, mitochondrion | 36.4 | 10.44 |
Bra007262.1-P | Field mustard | plastid | 37.66 | 9.18 |
Bra005733.1-P | Field mustard | cytosol | 41.84 | 9.06 |
Bra009342.1-P | Field mustard | cytosol | 32.64 | 6.96 |
Bra032565.1-P | Field mustard | mitochondrion | 37.66 | 4.83 |
Bra006530.1-P | Field mustard | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core |
EnsemblPlantsGene:Bra005023 | EnsemblPlants:Bra005023.1 | EnsemblPlants:Bra005023.1-P | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005524 | GO:GO:0005575 | GO:GO:0016020 | UniProt:M4CLD6 | InterPro:P-loop_NTPase | PFAM:PF00004 |
ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF60 | SMART:SM00382 | SUPFAM:SSF52540 | UniParc:UPI00025473E8 |
Description
AT1G53750 (E=8e-136) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase
Coordinates
chrA05:-:3024854..3025867
Molecular Weight (calculated)
26680.5 Da
IEP (calculated)
9.436
GRAVY (calculated)
-0.256
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHPEKFVKL GIDPPKGVLC YGPPGTGKTL LARAVANRTD ACFIRVIGSE LVQKYVGEGA RMVRELFQMA RSKKACIVFF DEVDAIGGAR FDDGVGGDNE
101: VQRTMLEIAN QLDGFDARGN IKVLMATNRP DTLDPALLRP GRLDRKVEFG LPDLESRTQI FKIHTRTVNC ERDIRFELLA RLCPNSTGAD IRSVCTEAGM
201: YAIRARRKTV TEKDFLDAVN KVIKGYQKFS ATPKYMVYN
101: VQRTMLEIAN QLDGFDARGN IKVLMATNRP DTLDPALLRP GRLDRKVEFG LPDLESRTQI FKIHTRTVNC ERDIRFELLA RLCPNSTGAD IRSVCTEAGM
201: YAIRARRKTV TEKDFLDAVN KVIKGYQKFS ATPKYMVYN
001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
Arabidopsis Description
RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.