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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • cytosol 4
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os02t0784700-00 Rice cytosol 77.41 98.4
GSMUA_AchrUn_... Banana cytosol 72.38 97.19
Bra030922.1-P Field mustard cytosol 99.16 55.63
Bra039688.1-P Field mustard cytosol 98.74 55.4
EES01223 Sorghum cytosol 98.74 55.4
Zm00001d018309_P003 Maize cytosol 98.74 55.4
EES07646 Sorghum cytosol 98.74 55.4
PGSC0003DMT400023656 Potato cytosol 99.16 55.37
PGSC0003DMT400012446 Potato cytosol 98.74 55.01
TraesCS7A01G156800.1 Wheat cytosol 97.91 54.93
TraesCS7B01G060900.1 Wheat golgi 97.91 54.93
TraesCS7D01G157200.1 Wheat cytosol 97.91 54.93
TraesCSU01G080700.1 Wheat cytosol 97.07 54.46
HORVU6Hr1G083150.1 Barley cytosol 97.07 54.46
TraesCS6B01G376500.1 Wheat golgi 97.07 54.46
TraesCS6D01G326400.1 Wheat cytosol 97.07 54.46
Bra040569.1-P Field mustard cytosol 97.49 53.81
HORVU7Hr1G032070.1 Barley cytosol 97.91 52.7
Zm00001d052078_P003 Maize cytosol 98.74 51.64
CDY30663 Canola cytosol 85.77 47.45
AT1G53780.2 Thale cress cytosol 90.38 34.84
Bra006529.1-P Field mustard cytosol 59.0 33.65
Bra002279.1-P Field mustard cytosol 58.58 33.41
Bra033655.1-P Field mustard cytosol 53.14 31.83
Bra035338.1-P Field mustard cytosol 53.14 31.83
Bra002662.1-P Field mustard cytosol 50.21 29.7
Bra020378.1-P Field mustard cytosol 50.21 29.7
Bra040214.1-P Field mustard cytosol 52.3 29.48
Bra039431.1-P Field mustard cytosol 52.3 29.48
Bra001152.1-P Field mustard cytosol 52.3 29.48
Bra011079.1-P Field mustard cytosol 53.56 28.89
Bra010342.1-P Field mustard cytosol 53.56 28.76
Bra006775.1-P Field mustard cytosol 45.61 27.88
Bra024165.1-P Field mustard cytosol 35.15 26.01
Bra020079.1-P Field mustard cytosol 58.58 19.42
Bra008198.1-P Field mustard cytosol 47.28 17.99
Bra017378.1-P Field mustard cytosol 34.73 13.76
Bra003123.1-P Field mustard cytosol 41.84 12.35
Bra029795.1-P Field mustard cytosol 41.42 12.24
Bra001297.1-P Field mustard cytosol 41.42 12.24
Bra034089.1-P Field mustard cytosol 41.42 12.22
Bra006978.1-P Field mustard cytosol 41.42 12.21
Bra022833.1-P Field mustard cytosol 36.4 11.71
Bra000999.1-P Field mustard cytosol, mitochondrion 36.4 10.44
Bra007262.1-P Field mustard plastid 37.66 9.18
Bra005733.1-P Field mustard cytosol 41.84 9.06
Bra009342.1-P Field mustard cytosol 32.64 6.96
Bra032565.1-P Field mustard mitochondrion 37.66 4.83
Bra006530.1-P Field mustard cytosol, nucleus, plastid 0.0 0.0
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.1Gene3D:3.40.50.300InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_core
EnsemblPlantsGene:Bra005023EnsemblPlants:Bra005023.1EnsemblPlants:Bra005023.1-PGO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0016020UniProt:M4CLD6InterPro:P-loop_NTPasePFAM:PF00004
ScanProsite:PS00674PANTHER:PTHR23073PANTHER:PTHR23073:SF60SMART:SM00382SUPFAM:SSF52540UniParc:UPI00025473E8
Description
AT1G53750 (E=8e-136) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase
Coordinates
chrA05:-:3024854..3025867
Molecular Weight (calculated)
26680.5 Da
IEP (calculated)
9.436
GRAVY (calculated)
-0.256
Length
239 amino acids
Sequence
(BLAST)
001: MLHPEKFVKL GIDPPKGVLC YGPPGTGKTL LARAVANRTD ACFIRVIGSE LVQKYVGEGA RMVRELFQMA RSKKACIVFF DEVDAIGGAR FDDGVGGDNE
101: VQRTMLEIAN QLDGFDARGN IKVLMATNRP DTLDPALLRP GRLDRKVEFG LPDLESRTQI FKIHTRTVNC ERDIRFELLA RLCPNSTGAD IRSVCTEAGM
201: YAIRARRKTV TEKDFLDAVN KVIKGYQKFS ATPKYMVYN
Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)
001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
Arabidopsis Description
RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.