Factsheet for Bra039431.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017345.1-P
Bra017890.1-P
Bra025167.1-P
Bra035416.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05530.1	Bra017890.1-P	AT1G59900.1	24846764
AT3G05530.1	Bra035416.1-P	AT1G59900.1	24846764
AT3G05530.1	Bra017345.1-P	AT3G25860.1	24846764
AT3G05530.1	Bra025167.1-P	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05176	Canola	cytosol	100.0	100.0
CDY27761	Canola	cytosol	100.0	100.0
Bra001152.1-P	Field mustard	cytosol	99.76	99.76
AT3G05530.1	Thale cress	cytosol	99.76	99.76
Bra040214.1-P	Field mustard	cytosol	99.76	99.76
VIT_14s0060g02260.t01	Wine grape	cytosol	92.22	96.54
KRG92899	Soybean	cytosol, nucleus	95.05	95.27
KRH33891	Soybean	endoplasmic reticulum, nucleus	94.81	95.04
Solyc01g099760.2.1	Tomato	nucleus, plastid	94.58	94.8
PGSC0003DMT400063574	Potato	cytosol	94.58	94.8
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	85.85	94.79
GSMUA_Achr9P13230_001	Banana	cytosol	90.33	94.57
VIT_05s0020g01180.t01	Wine grape	cytosol	94.34	94.56
GSMUA_Achr5P04520_001	Banana	cytosol	89.39	93.58
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	93.4	92.31
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	93.16	91.86
Os02t0803700-01	Rice	cytosol, nucleus, plastid	92.92	91.84
EER87942	Sorghum	cytosol	92.92	91.63
Zm00001d045163_P001	Maize	mitochondrion	37.97	91.48
KXG31298	Sorghum	cytosol	92.22	91.36
KRH68501	Soybean	nucleus	90.57	90.35
TraesCS3A01G421900.1	Wheat	cytosol	92.45	90.32
TraesCS3B01G457100.1	Wheat	cytosol, golgi	92.45	90.32
TraesCS3D01G417000.1	Wheat	cytosol	92.22	90.09
TraesCS7B01G036400.1	Wheat	cytosol	89.15	88.52
TraesCS7D01G134800.1	Wheat	cytosol	88.44	87.41
Zm00001d018409_P007	Maize	cytosol	90.09	85.27
KRG96790	Soybean	mitochondrion	66.27	84.64
Bra005023.1-P	Field mustard	cytosol	29.48	52.3
Bra006529.1-P	Field mustard	cytosol	40.33	40.81
Bra002279.1-P	Field mustard	cytosol	39.86	40.33
Bra011079.1-P	Field mustard	cytosol	41.75	39.95
Bra010342.1-P	Field mustard	cytosol	41.75	39.78
Bra006775.1-P	Field mustard	cytosol	36.56	39.64
Bra020378.1-P	Field mustard	cytosol	37.26	39.11
Bra002662.1-P	Field mustard	cytosol	37.26	39.11
Bra039688.1-P	Field mustard	cytosol	38.92	38.73
Bra030922.1-P	Field mustard	cytosol	38.92	38.73
Bra033655.1-P	Field mustard	cytosol	36.08	38.35
Bra035338.1-P	Field mustard	cytosol	35.85	38.1
Bra040569.1-P	Field mustard	cytosol	38.68	37.88
Bra024165.1-P	Field mustard	cytosol	25.71	33.75
Bra020079.1-P	Field mustard	cytosol	40.57	23.86
Bra008198.1-P	Field mustard	cytosol	33.02	22.29
Bra017378.1-P	Field mustard	cytosol	26.89	18.91
Bra003123.1-P	Field mustard	cytosol	30.66	16.05
Bra006978.1-P	Field mustard	cytosol	30.42	15.91
Bra001297.1-P	Field mustard	cytosol	29.25	15.33
Bra034089.1-P	Field mustard	cytosol	29.25	15.31
Bra029795.1-P	Field mustard	cytosol	29.01	15.2
Bra022833.1-P	Field mustard	cytosol	24.06	13.73
Bra000999.1-P	Field mustard	cytosol, mitochondrion	25.0	12.73
Bra007262.1-P	Field mustard	plastid	27.12	11.73
Bra005733.1-P	Field mustard	cytosol	29.95	11.5
Bra009342.1-P	Field mustard	cytosol	23.58	8.92
Bra032565.1-P	Field mustard	mitochondrion	26.65	6.06
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.24	0.45

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra039431	EnsemblPlants:Bra039431.1	EnsemblPlants:Bra039431.1-P	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0036402	GO:GO:1901800
UniProt:M4FEB0	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC3	PANTHER:PTHR23073
PANTHER:PTHR23073:SF7	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI00000A229F	SEG:seg

Description

AT3G05530 (E=3e-230) RPT5A, ATS6A.2 | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding

Coordinates

chrA05:-:23308050..23310205

Molecular Weight (calculated)

47480.8 Da

IEP (calculated)

4.651

GRAVY (calculated)

-0.430

Length

424 amino acids

Sequence
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDIVRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.