Factsheet for Bra000999.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74308	Canola	mitochondrion	83.79	98.87
CDX91939	Canola	cytosol, mitochondrion	89.32	95.75
AT3G01610.2	Thale cress	nucleus	76.95	77.23
Bra022833.1-P	Field mustard	cytosol	68.31	76.58
Zm00001d009592_P001	Maize	cytosol	17.53	55.73
VIT_01s0010g02600.t01	Wine grape	cytosol	53.3	53.82
Solyc01g068330.2.1	Tomato	nucleus	52.34	53.11
PGSC0003DMT400046254	Potato	cytosol	52.22	52.92
PGSC0003DMT400015455	Potato	mitochondrion	48.38	52.82
Zm00001d035913_P002	Maize	cytosol, mitochondrion	46.46	52.8
GSMUA_Achr4P03560_001	Banana	mitochondrion	48.98	52.17
EER87717	Sorghum	cytosol	48.5	52.13
Os06t0109400-01	Rice	cytosol	47.54	51.43
Zm00001d045566_P001	Maize	cytosol, mitochondrion	47.3	51.3
TraesCS5D01G081900.1	Wheat	mitochondrion	44.66	50.07
Zm00001d022096_P002	Maize	mitochondrion	45.38	49.93
TraesCS7D01G023600.1	Wheat	mitochondrion	46.58	49.43
TraesCS4A01G463300.1	Wheat	mitochondrion	46.46	49.3
TraesCS7A01G025800.1	Wheat	mitochondrion	46.34	49.17
TraesCS3A01G450800.1	Wheat	mitochondrion	43.58	48.66
TraesCS3D01G443600.1	Wheat	mitochondrion	43.58	48.53
TraesCS3B01G487900.1	Wheat	mitochondrion	43.22	48.32
Zm00001d027244_P001	Maize	cytosol	20.89	47.54
HORVU7Hr1G002880.2	Barley	plastid	44.66	46.44
Zm00001d002717_P001	Maize	mitochondrion	22.69	46.32
KRH10420	Soybean	mitochondrion	27.49	46.26
Zm00001d053999_P001	Maize	cytosol	21.25	43.07
Bra005023.1-P	Field mustard	cytosol	10.44	36.4
Bra029795.1-P	Field mustard	cytosol	32.65	33.62
Bra017378.1-P	Field mustard	cytosol	24.25	33.5
Bra001297.1-P	Field mustard	cytosol	32.41	33.37
Bra034089.1-P	Field mustard	cytosol	32.41	33.33
Bra003123.1-P	Field mustard	cytosol	31.81	32.72
Bra006978.1-P	Field mustard	cytosol	31.69	32.55
Bra033655.1-P	Field mustard	cytosol	14.89	31.08
Bra035338.1-P	Field mustard	cytosol	14.77	30.83
Bra030922.1-P	Field mustard	cytosol	14.41	28.17
Bra039688.1-P	Field mustard	cytosol	14.41	28.17
Bra020378.1-P	Field mustard	cytosol	13.45	27.72
Bra002662.1-P	Field mustard	cytosol	13.45	27.72
Bra040569.1-P	Field mustard	cytosol	14.17	27.25
Bra006775.1-P	Field mustard	cytosol	12.61	26.85
Bra006529.1-P	Field mustard	cytosol	13.45	26.73
Bra002279.1-P	Field mustard	cytosol	13.33	26.49
Bra011079.1-P	Field mustard	cytosol	13.45	25.28
Bra010342.1-P	Field mustard	cytosol	13.45	25.17
Bra039431.1-P	Field mustard	cytosol	12.73	25.0
Bra040214.1-P	Field mustard	cytosol	12.73	25.0
Bra001152.1-P	Field mustard	cytosol	12.61	24.76
Bra005733.1-P	Field mustard	cytosol	31.69	23.91
Bra007262.1-P	Field mustard	plastid	27.01	22.96
Bra024165.1-P	Field mustard	cytosol	8.4	21.67
Bra008198.1-P	Field mustard	cytosol	13.93	18.47
Bra009342.1-P	Field mustard	cytosol	23.65	17.57
Bra020079.1-P	Field mustard	cytosol	13.33	15.4
Bra032565.1-P	Field mustard	mitochondrion	23.77	10.62
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
EnsemblPlantsGene:Bra000999	EnsemblPlants:Bra000999.1	EnsemblPlants:Bra000999.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	UniProt:M4C9X0	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF55	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI00025407E6	SEG:seg

Description

AT3G01610 (E=5e-306) CDC48C, emb1354 | CDC48C; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding

Coordinates

chrA03:-:14316304..14319513

Molecular Weight (calculated)

91382.0 Da

IEP (calculated)

6.886

GRAVY (calculated)

-0.575

Length

833 amino acids

Sequence
(BLAST)

001: MVRRGRGGGM GGGINRRYLS QVMDSCGKDL ATAEEIVDDL RSRYGNFARL TRQVLLLNVR NVLTARNNNN KRAAKDEEED DNNGGGDDSD AAPSKMKKPR
101: RVDEKEEKLQ RAEQSHLKRR NRDKSPSSSS SSSSEEEDSG DISTSEDAIY SQKLSPRFDL INDSLRDNYA KMNNSPAAKK PVVEKNVEVE TVTNNKGRSK
201: MGLKKEARVS LPLSGTTPTD NNNNNNKGGG GGPTFKDFGG IKKVLDDLEN YVLFPLLNPP PFKTMGVKPP SGILFHGPPG CGKTQLANAI ANEVGVPFYQ
301: ISATEVVSGV SGASEENIRE LFSKAYRTAP SIVFIDEIDA IGSKRENQQR EMEKRIVTQL LTCMDGPRNK GDKNDAADST SSGYVLVIGA TNRPDALDPA
401: LRRSGRFERE IALNVPDEDA RAEILSVVAQ RLRLEGSFDM KRIARLTPGF VGADLEGVAN MAGSLGIKRV KDSRKLQLSG DSDNQDDRSW LRQPWSEEDL
501: EKLFVRMSDF EEAVKLVKGS LTREGFSTVP NVTWGDVGGL DHLRRELNNY IVRPIKNPEI YKAFGASLET GFLLYGPPGC GKTLVAKAVA NEAGANFIHI
601: KGPELLNKYV GESELAIRTL FQRARTSSPC VLFFDEVDAL TTSRGREGGS VVESVLNQFL TELDGGERRN VYVIGATNRP DVIDSALLRP GRFGNLVYVP
701: LPNADERVLI LKSIAKKRPI DPSVDLDAIA KNCEGFSGAD LANLMDKAIH VAVKEKFGSS ESSEDDNIDL SDCTIKMTHF EQGLSLVTPS VSKQQIKHYE
801: ELPKKLQRST GRNNMEQINV GSTFALEENK GLS

Best Arabidopsis Sequence Match ( AT3G01610.2 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.