Factsheet for AT3G01610.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74308	Canola	mitochondrion	66.63	78.33
CDY25624	Canola	cytosol	23.61	78.09
CDX91939	Canola	cytosol, mitochondrion	72.29	77.22
Bra000999.1-P	Field mustard	cytosol, mitochondrion	77.23	76.95
CDX84794	Canola	cytosol	62.53	69.85
CDY23949	Canola	cytosol	60.6	69.38
Bra022833.1-P	Field mustard	cytosol	61.93	69.18
CDY45794	Canola	nucleus	64.58	67.25
CDX89698	Canola	endoplasmic reticulum	54.46	65.04
Zm00001d009592_P001	Maize	cytosol	17.35	54.96
Solyc01g068330.2.1	Tomato	nucleus	53.25	53.84
PGSC0003DMT400046254	Potato	cytosol	53.25	53.77
VIT_01s0010g02600.t01	Wine grape	cytosol	53.25	53.58
Zm00001d035913_P002	Maize	cytosol, mitochondrion	46.51	52.66
GSMUA_Achr4P03560_001	Banana	mitochondrion	49.4	52.43
PGSC0003DMT400015455	Potato	mitochondrion	48.07	52.29
Os06t0109400-01	Rice	cytosol	48.31	52.08
EER87717	Sorghum	cytosol	48.55	52.0
Zm00001d045566_P001	Maize	cytosol, mitochondrion	47.71	51.56
TraesCS7D01G023600.1	Wheat	mitochondrion	48.07	50.83
TraesCS4A01G463300.1	Wheat	mitochondrion	47.95	50.7
TraesCS7A01G025800.1	Wheat	mitochondrion	47.83	50.57
TraesCS5D01G081900.1	Wheat	mitochondrion	45.18	50.47
Zm00001d022096_P002	Maize	mitochondrion	46.02	50.46
TraesCS3A01G450800.1	Wheat	mitochondrion	43.98	48.93
TraesCS3D01G443600.1	Wheat	mitochondrion	43.98	48.8
TraesCS3B01G487900.1	Wheat	mitochondrion	43.61	48.59
KRH10420	Soybean	mitochondrion	28.55	47.88
Zm00001d027244_P001	Maize	cytosol	21.08	47.81
HORVU7Hr1G002880.2	Barley	plastid	45.78	47.44
Zm00001d002717_P001	Maize	mitochondrion	22.41	45.59
Zm00001d053999_P001	Maize	cytosol	21.33	43.07
AT2G03670.1	Thale cress	cytosol	24.7	34.0
AT3G09840.1	Thale cress	cytosol	31.08	31.89
AT5G03340.1	Thale cress	cytosol	30.84	31.6
AT3G53230.1	Thale cress	cytosol	30.6	31.17
AT5G43010.1	Thale cress	cytosol	14.22	29.57
AT1G45000.1	Thale cress	cytosol	14.22	29.57
AT1G53750.1	Thale cress	cytosol	14.34	27.93
AT5G19990.1	Thale cress	cytosol	13.86	27.45
AT5G20000.1	Thale cress	cytosol	13.61	26.97
AT5G58290.1	Thale cress	cytosol	13.13	26.72
AT4G29040.1	Thale cress	cytosol	13.61	25.51
AT2G20140.1	Thale cress	cytosol	13.61	25.51
AT3G05530.1	Thale cress	cytosol	12.77	25.0
AT1G09100.1	Thale cress	cytosol	12.29	24.11
AT3G56690.1	Thale cress	cytosol, plastid	28.8	23.39
AT1G03000.1	Thale cress	mitochondrion	23.61	20.83
AT1G53780.2	Thale cress	cytosol	13.73	18.39
AT5G08470.1	Thale cress	cytosol	23.13	16.99

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:821105	UniProt:A0A1I9LNC6	InterPro:AAA+_ATPase
ProteinID:AAF01545.1	ProteinID:AEE73695.1	ProteinID:ANM64084.1	ArrayExpress:AT3G01610	EnsemblPlantsGene:AT3G01610	RefSeq:AT3G01610
TAIR:AT3G01610	RefSeq:AT3G01610-TAIR-G	EnsemblPlants:AT3G01610.2	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EMBL:AY136443
Unigene:At.27731	EMBL:BT002135	Symbol:CDC48C	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005856	GO:GO:0006810	GO:GO:0007049	GO:GO:0008150	GO:GO:0009524
GO:GO:0009987	GO:GO:0015031	GO:GO:0051301	RefSeq:NP_001326134.1	RefSeq:NP_186810.2	ProteinID:OAP01256.1
InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF55	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI000848F94E	SEG:seg	:	:	:

Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]

Coordinates

chr3:+:231651..235279

Molecular Weight (calculated)

91168.1 Da

IEP (calculated)

6.466

GRAVY (calculated)

-0.513

Length

830 amino acids

Sequence
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.