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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX89923 Canola cytosol 70.24 86.52
CDY32490 Canola mitochondrion 84.48 85.76
CDY37450 Canola mitochondrion 83.74 85.19
VIT_07s0104g01610.t01 Wine grape cytosol 65.36 65.56
Solyc06g008730.2.1 Tomato cytosol 62.91 63.72
KRG96401 Soybean mitochondrion 62.17 63.66
PGSC0003DMT400013679 Potato cytosol 62.7 63.44
KRH68139 Soybean cytosol 44.1 61.94
GSMUA_Achr6P20030_001 Banana cytosol 58.66 57.14
EES12865 Sorghum mitochondrion 51.01 51.72
TraesCS2B01G480000.3 Wheat mitochondrion 50.48 50.91
TraesCS2A01G457600.3 Wheat mitochondrion 50.37 50.8
Os04t0617600-01 Rice cytosol 50.69 50.74
TraesCS2D01G458300.3 Wheat mitochondrion 50.27 50.7
HORVU2Hr1G104530.9 Barley cytosol 48.35 49.84
Zm00001d002462_P010 Maize mitochondrion 50.9 45.06
Bra032565.1-P Field mustard mitochondrion 83.42 42.11
AT4G29040.1 Thale cress cytosol 13.92 29.57
AT2G20140.1 Thale cress cytosol 13.82 29.35
AT5G43010.1 Thale cress cytosol 12.01 28.32
AT1G53750.1 Thale cress cytosol 12.75 28.17
AT1G45000.1 Thale cress cytosol 11.9 28.07
AT3G09840.1 Thale cress cytosol 24.12 28.06
AT5G03340.1 Thale cress cytosol 24.02 27.9
AT2G03670.1 Thale cress cytosol 17.75 27.69
AT3G53230.1 Thale cress cytosol 23.8 27.48
AT5G20000.1 Thale cress cytosol 12.22 27.45
AT5G19990.1 Thale cress cytosol 12.22 27.45
AT3G05530.1 Thale cress cytosol 12.22 27.12
AT5G58290.1 Thale cress cytosol 11.69 26.96
AT1G09100.1 Thale cress cytosol 12.01 26.71
AT3G01610.2 Thale cress nucleus 20.83 23.61
AT3G56690.1 Thale cress cytosol, plastid 23.91 22.02
AT1G53780.2 Thale cress cytosol 12.01 18.23
AT5G08470.1 Thale cress cytosol 21.36 17.79
Protein Annotations
Gene3D:1.10.8.60MapMan:23.4.1.5.1.2Gene3D:3.40.50.300EntrezGene:839315UniProt:A0A178WG59InterPro:AAA+_ATPase
ProteinID:AAD25809.1ProteinID:AEE27513.1ArrayExpress:AT1G03000EnsemblPlantsGene:AT1G03000RefSeq:AT1G03000TAIR:AT1G03000
RefSeq:AT1G03000-TAIR-GEnsemblPlants:AT1G03000.1TAIR:AT1G03000.1InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreEMBL:AY078962
EMBL:AY333116Unigene:At.42567EMBL:BT001151GO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006629GO:GO:0006635GO:GO:0006810GO:GO:0007031GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009987GO:GO:0015031GO:GO:0016043GO:GO:0016558RefSeq:NP_171799.2
ProteinID:OAP16443.1InterPro:P-loop_NTPaseSymbol:PEX6PFAM:PF00004PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281ScanProsite:PS00674PANTHER:PTHR23077
PANTHER:PTHR23077:SF9UniProt:Q8RY16SMART:SM00382SUPFAM:SSF52540UniParc:UPI00000AC0B4SEG:seg
Description
PEX6Peroxisome biogenesis protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY16]
Coordinates
chr1:-:687795..692660
Molecular Weight (calculated)
103051.0 Da
IEP (calculated)
5.975
GRAVY (calculated)
-0.196
Length
941 amino acids
Sequence
(BLAST)
001: MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.