Factsheet for VIT_07s0104g01610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96401	Soybean	mitochondrion	68.12	69.53
KRH68139	Soybean	cytosol	49.57	69.4
Solyc06g008730.2.1	Tomato	cytosol	67.38	68.03
PGSC0003DMT400013679	Potato	cytosol	66.63	67.2
CDY37450	Canola	mitochondrion	64.71	65.62
AT1G03000.1	Thale cress	mitochondrion	65.56	65.36
CDY32490	Canola	mitochondrion	64.39	65.16
CDX89923	Canola	cytosol	52.77	64.79
GSMUA_Achr6P20030_001	Banana	cytosol	61.83	60.04
EES12865	Sorghum	mitochondrion	51.92	52.48
Os04t0617600-01	Rice	cytosol	52.03	51.91
TraesCS2B01G480000.3	Wheat	mitochondrion	51.49	51.77
TraesCS2D01G458300.3	Wheat	mitochondrion	51.28	51.55
TraesCS2A01G457600.3	Wheat	mitochondrion	51.07	51.34
HORVU2Hr1G104530.9	Barley	cytosol	48.61	49.95
Zm00001d002462_P010	Maize	mitochondrion	50.21	44.31
Bra032565.1-P	Field mustard	mitochondrion	64.07	32.24
VIT_18s0001g13090.t01	Wine grape	cytosol	12.26	28.89
VIT_03s0038g04350.t01	Wine grape	cytosol	11.94	28.07
VIT_08s0040g01480.t01	Wine grape	cytosol	23.77	27.67
VIT_07s0005g05160.t01	Wine grape	cytosol	12.9	27.19
VIT_06s0004g08220.t01	Wine grape	cytosol	12.05	27.03
VIT_09s0002g00170.t01	Wine grape	cytosol	12.26	27.0
VIT_14s0060g02260.t01	Wine grape	cytosol	11.62	26.91
VIT_04s0008g04690.t01	Wine grape	cytosol	12.05	26.9
VIT_09s0002g05800.t01	Wine grape	cytosol	11.94	26.86
VIT_06s0061g00340.t01	Wine grape	cytosol	21.86	26.8
VIT_05s0020g01180.t01	Wine grape	cytosol	12.05	26.71
VIT_17s0000g08890.t01	Wine grape	cytosol	23.13	26.66
VIT_11s0016g00230.t01	Wine grape	cytosol	11.94	26.35
VIT_01s0010g02600.t01	Wine grape	cytosol	20.79	23.64
VIT_08s0040g00910.t01	Wine grape	cytosol	22.92	20.3
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	23.35	19.31

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100259587	wikigene:100259587	MapMan:23.4.1.5.1.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CBI32241	ProteinID:CBI32241.3	UniProt:D7TP18	EMBL:FN596005
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006629	GO:GO:0006635	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0016558	EntrezGene:LOC100259587	wikigene:LOC100259587
InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF9	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI0001BE3F07	ArrayExpress:VIT_07s0104g01610	EnsemblPlantsGene:VIT_07s0104g01610	EnsemblPlants:VIT_07s0104g01610.t01	unigene:Vvi.17778
RefSeq:XP_002269370	RefSeq:XP_002269370.2	RefSeq:XP_010652050.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:-:2590288..2601320

Molecular Weight (calculated)

103019.0 Da

IEP (calculated)

7.826

GRAVY (calculated)

-0.181

Length

938 amino acids

Sequence
(BLAST)

001: MVERRKPLVL SSTKILLDSI RNSARLNKRD GVTGNELSAN ESSPTLHLPV GILRLSDEKS VSSDPKLALL DDSALVGLPT SALKRLSVTS GSPVLVRNVE
101: TNVWRIAHVV VLDSPRAHGH SSDSKLPLSH SPHTMLIFPS LKYPQNDSVL LDGEVAYLSP LLAFNLDLHI SCLKSLVHQG KETLAYLFEA KADEETRGRG
201: SEASPISLSL EQSARLPRFA SHLRASFVKI PECGTLESLQ GNSSIEAEDR QEMIDLALHN YFKVDRYLAR GDLFSVGIKW NCRSVMCIPC SQRMQNASDD
301: IIHFKVVAME PADEPVLRVN CTQTALVLGG SVPSAVPPDL LIGGSKGFMP LQADTVKMLA SILTPLVCPS TLASKLRVTV LLYGLAGAGK RTVIRHVAQR
401: LGLHIVEYSC HNLMSSAERK TSVALAQVFN TAHRYSPTIL LLRHFDVFRT QEGSSNDQVG IASEVASVIR KFTEPVIEDE DIYSEKKLTS DFQLKDAEKI
501: KRHQVLLVAA ADSSEGLPPT IRRCFSHEIR MGPLTEEQRA KMLSQSLQSI SELLPNTDSE DFIKDIVGQT SGFMLRDMRA LIADTGANLM PRCQTNKLEP
601: GGTDNSLRFK AVQDTKSCEE APQVLGKDDL AKALERSKKR NASALGTPKV PNVKWEDVGG LEDVKKSILD TVQLPLLHKD LFSSGLRKRS GVLLYGPPGT
701: GKTLLAKAVA TECSLNFLSV KGPELINMYI GESEKNVRDI FQKARSARPC VIFFDELDSL APARGASGDS GGVMDRVVSQ MLAEIDGLND STQDLFIIGA
801: SNRPDLIDPA LLRPGRFDKL LYVGVNSDTS YRERVLKALT RKFMLHEDVS LYSIAKKCPP NFTGADMYAL CADAWFQAAK RKVLSPPSDS SSMENQADSV
901: IIRYDDFVKV LRDLTPSLSV AELKKYERLR DQFEGASK

Best Arabidopsis Sequence Match ( AT1G03000.1 )
(BLAST)

001: MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S

Arabidopsis Description

PEX6Peroxisome biogenesis protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.