Factsheet for VIT_04s0008g04690.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g05800.t01	Wine grape	cytosol	95.0	95.68
GSMUA_Achr7P09950_001	Banana	cytosol	91.19	95.04
Zm00001d053616_P002	Maize	cytosol	93.57	93.13
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	93.33	92.89
TraesCS6A01G177600.1	Wheat	cytosol	92.38	92.82
TraesCS6B01G207100.1	Wheat	cytosol	92.38	92.82
TraesCS6D01G166700.1	Wheat	cytosol, golgi	92.38	92.82
Os02t0205300-01	Rice	cytosol	93.57	92.69
HORVU7Hr1G084550.2	Barley	cytosol	91.19	90.54
TraesCS7A01G372600.1	Wheat	cytosol	91.19	90.54
TraesCS7B01G254400.1	Wheat	cytosol	91.19	90.54
TraesCS7D01G350300.1	Wheat	cytosol	91.19	90.54
Os06t0600100-01	Rice	plasma membrane	87.62	87.0
HORVU6Hr1G036990.7	Barley	cytosol	92.38	83.98
VIT_09s0002g00170.t01	Wine grape	cytosol	45.24	44.6
VIT_03s0038g04350.t01	Wine grape	cytosol	41.43	43.61
VIT_18s0001g13090.t01	Wine grape	cytosol	41.19	43.47
VIT_11s0016g00230.t01	Wine grape	cytosol	41.9	41.41
VIT_14s0060g02260.t01	Wine grape	cytosol	39.52	40.99
VIT_05s0020g01180.t01	Wine grape	cytosol	40.48	40.19
VIT_07s0005g05160.t01	Wine grape	cytosol	40.71	38.43
VIT_06s0004g08220.t01	Wine grape	cytosol	37.62	37.8
VIT_06s0061g00340.t01	Wine grape	cytosol	28.1	15.42
VIT_17s0000g08890.t01	Wine grape	cytosol	29.76	15.36
VIT_08s0040g01480.t01	Wine grape	cytosol	29.05	15.14
VIT_01s0010g02600.t01	Wine grape	cytosol	27.62	14.06
VIT_07s0104g01610.t01	Wine grape	cytosol	26.9	12.05
VIT_08s0040g00910.t01	Wine grape	cytosol	27.62	10.95
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	27.38	10.14
Os06t0600301-00	Rice	plasma membrane	1.67	3.1

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100254376	wikigene:100254376	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CBI20968	ProteinID:CBI20968.3
ncoils:Coil	UniProt:D7SUL9	EMBL:FN595231	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595
GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	EntrezGene:LOC100254376	wikigene:LOC100254376
InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF57	SMART:SM00382
SUPFAM:SSF52540	TIGR:TC56672	TIGR:TC59465	TIGRFAMs:TIGR01242	UniParc:UPI00015C8F6A	ArrayExpress:VIT_04s0008g04690
EnsemblPlantsGene:VIT_04s0008g04690	EnsemblPlants:VIT_04s0008g04690.t01	unigene:Vvi.6909	RefSeq:XP_002284747	RefSeq:XP_002284747.1	SEG:seg

Description

No Description!

Coordinates

chr4:-:4133956..4146546

Molecular Weight (calculated)

47223.7 Da

IEP (calculated)

9.196

GRAVY (calculated)

-0.340

Length

420 amino acids

Sequence
(BLAST)

001: MATAVTELSQ SGPAMVGEVC TAKTTSSKQG DGLRQYYLQH IHDLQLQVRQ KSHNLNRLEA QRNDLNSRVR MLREELQLLQ EPGSYVGEVV KVMGKSKVLV
101: KVHPEGKYVV DIDKNIDITK ITPSTRVALR NDSYVLHLIL PSKVDPLVNL MKVEKVPDST YDMIGGLDQQ IKEIKEVIEL PIKHPELFES LGIAQPKGVL
201: LYGPPGTGKT LLARAVAHHT DCTFIRVSGS ELVQKYIGEG SRMVRELFVM AREHAPSIIF MDEIDSIGSA RMESGTGNGD SEVQRTMLEL LNQLDGFEAS
301: NKIKVLMATN RIDILDQALL RPGRIDRKIE FPNPNEESRF DILKIHSRKM NLMRGIDLKK IAEKMNGASG AELKAVCTEA GMFALRERRV HVTQEDFEMA
401: VAKVMKKETE KNMSLRKLWK

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.