Factsheet for VIT_11s0016g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	36.0	85.96
Os02t0784700-00	Rice	cytosol	37.88	85.64
VIT_09s0002g00170.t01	Wine grape	cytosol	80.47	80.28
CDY36602	Canola	cytosol	79.76	79.58
CDY24076	Canola	cytosol	79.76	79.58
CDY30665	Canola	cytosol	79.53	79.34
AT1G53750.1	Thale cress	cytosol	79.53	79.34
Bra039688.1-P	Field mustard	cytosol	79.53	79.34
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	79.76	79.02
CDY25685	Canola	cytosol	78.82	78.64
CDY02494	Canola	cytosol	78.82	78.64
Bra030922.1-P	Field mustard	cytosol	78.82	78.64
CDX74842	Canola	cytosol	75.29	77.67
CDY20470	Canola	cytosol, plasma membrane	77.41	77.23
Bra040569.1-P	Field mustard	cytosol	78.12	76.67
CDY08201	Canola	cytosol	60.94	72.96
KRH06953	Soybean	cytosol	41.18	64.81
VIT_09s0002g05800.t01	Wine grape	cytosol	41.88	42.69
VIT_04s0008g04690.t01	Wine grape	cytosol	41.41	41.9
VIT_03s0038g04350.t01	Wine grape	cytosol	38.12	40.6
VIT_18s0001g13090.t01	Wine grape	cytosol	37.88	40.45
VIT_14s0060g02260.t01	Wine grape	cytosol	36.24	38.02
VIT_05s0020g01180.t01	Wine grape	cytosol	37.41	37.59
VIT_06s0004g08220.t01	Wine grape	cytosol	36.24	36.84
VIT_07s0005g05160.t01	Wine grape	cytosol	37.88	36.18
VIT_06s0061g00340.t01	Wine grape	cytosol	31.53	17.52
VIT_17s0000g08890.t01	Wine grape	cytosol	32.94	17.2
VIT_08s0040g01480.t01	Wine grape	cytosol	32.24	17.0
VIT_01s0010g02600.t01	Wine grape	cytosol	27.06	13.94
VIT_07s0104g01610.t01	Wine grape	cytosol	26.35	11.94
VIT_08s0040g00910.t01	Wine grape	cytosol	29.18	11.71
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	24.71	9.26

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100245720	wikigene:100245720	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CBI27738	ProteinID:CBI27738.3
UniProt:D7TC80	EMBL:FN595756	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597
GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	EntrezGene:LOC100245720	wikigene:LOC100245720	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF60	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR01242	UniParc:UPI00015C8D31	ArrayExpress:VIT_11s0016g00230	EnsemblPlantsGene:VIT_11s0016g00230	EnsemblPlants:VIT_11s0016g00230.t01	RefSeq:XP_002273189
RefSeq:XP_002273189.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:266568..271652

Molecular Weight (calculated)

47850.3 Da

IEP (calculated)

8.537

GRAVY (calculated)

-0.390

Length

425 amino acids

Sequence
(BLAST)

001: MASQREDKIK DEKTPPLDED DIALLKTYGQ GPYSDRIKIV EKEIEEMVKK MDDICGIAES DTGLAPPSHW NLPSDRLMMQ NEKSLRVARC TRIINPNSEN
101: PQYMIDVKPT ATYVVKLGAN VSQTDIDEGM RVGIDRITRQ IEMPLPPKIN PSVTMLIVEE KPNVTYDDVG GCKEQIEKLR EVVELPMLHP EKFEKLGIEP
201: PKGVLFYGPP GTGKTLLARA VANRTGACFI RVIGSELVRR YVGEGARMVR QIFRMARSKR ACIVFFDEVD AIGGARFDDG KGGDREVQRT MLEIVNQLDG
301: FDARGNIKVM MATNRPGTLD PALLRPGRLD RKLEFGLPDV KSGTQIFKIH TRTMNCERDI RFELLARICP SSTGADIRSV CTEAGMFAIR ARRKIVTERD
401: FLDSIKKVIK GHLKFSATPE YMIYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.