Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 93.62 | 98.88 |
| Bra005023.1-P | Field mustard | cytosol | 98.4 | 77.41 |
| Os06t0192600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 100.0 | 44.13 |
| KRG97280 | Soybean | cytosol, nucleus | 99.47 | 43.9 |
| KRH06311 | Soybean | cytosol | 99.47 | 43.9 |
| KRH47728 | Soybean | cytosol, nucleus | 99.47 | 43.9 |
| Solyc06g063140.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 99.47 | 43.59 |
| KRH06953 | Soybean | cytosol | 55.32 | 38.52 |
| VIT_11s0016g00230.t01 | Wine grape | cytosol | 85.64 | 37.88 |
| CDY30663 | Canola | cytosol | 82.45 | 35.88 |
| AT1G53780.2 | Thale cress | cytosol | 91.49 | 27.74 |
| Os06t0600100-01 | Rice | plasma membrane | 55.32 | 24.59 |
| Os02t0205300-01 | Rice | cytosol | 54.79 | 24.29 |
| Os10t0442600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 24.47 | 23.59 |
| Os02t0199900-01 | Rice | nucleus, plasma membrane | 50.0 | 23.5 |
| Os06t0607800-01 | Rice | nucleus | 50.0 | 23.44 |
| Os04t0284600-01 | Rice | cytosol | 43.62 | 22.97 |
| Os02t0803700-01 | Rice | cytosol, nucleus, plastid | 50.53 | 22.14 |
| Os06t0173100-01 | Rice | cytosol, nucleus, plasma membrane | 50.53 | 22.14 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 50.53 | 21.21 |
| Os03t0298400-01 | Rice | plasma membrane | 50.53 | 21.11 |
| Os02t0325100-01 | Rice | plastid | 46.81 | 21.0 |
| Os09t0560200-01 | Rice | cytosol, mitochondrion | 42.55 | 17.86 |
| Os05t0376200-00 | Rice | cytosol | 33.51 | 16.11 |
| Os04t0498800-01 | Rice | cytosol | 37.77 | 12.28 |
| Os08t0556550-01 | Rice | cytosol | 5.85 | 10.28 |
| Os06t0109400-01 | Rice | cytosol | 35.11 | 8.57 |
| Os03t0151800-02 | Rice | cytosol, extracellular, nucleus, plasma membrane, plastid | 35.11 | 8.16 |
| Os08t0413000-00 | Rice | mitochondrion | 32.98 | 6.86 |
| Os04t0617600-01 | Rice | cytosol | 32.98 | 6.6 |
| Os06t0600301-00 | Rice | plasma membrane | 1.06 | 0.88 |
| Os08t0556400-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 0.0 | 0.0 |
| Os11t0220400-01 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:Os02g0784700 | EnsemblPlants:Os02t0784700-00 |
| InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF60 | SUPFAM:SSF52540 |
| UniParc:UPI0003938AAC | : | : | : | : | : |
Description
19S REGULATORY PARTICLE ATPASE SUBUNIT 1BSimilar to 26S protease regulatory subunit 7 (Fragment). (Os02t0784700-00)
Coordinates
chr2:-:33315563..33316623
Molecular Weight (calculated)
21276.8 Da
IEP (calculated)
9.202
GRAVY (calculated)
-0.367
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: VQKYVGEGAR MVRELFQMAR SKKACIVFFD EVDAIGGARF DDGVGGDNEV QRTMLEIVNQ LDGFDARGNI KVLMATNRPD TLDPALLRPG RLDRKVEFGL
101: PDLEGRTQIF KIHTRTMNCE RDIRFELLAR LCPNSTGADI RSVCTEAGMY AIRARRKTVT EKDFLDAVNK VIKGYQKFSA TPKYMVYN
101: PDLEGRTQIF KIHTRTMNCE RDIRFELLAR LCPNSTGADI RSVCTEAGMY AIRARRKTVT EKDFLDAVNK VIKGYQKFSA TPKYMVYN
001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
Arabidopsis Description
RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.