Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
23777608
plasma membrane: 27800704 plastid: 27992503 |
msms PMID:
23777608
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0151800-02 | |
| Os04t0457800-01 | |
| Os06t0225300-01 | |
| Os08t0174700-01 | |
| Os10t0442600-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0784700-00 | Rice | cytosol | 23.59 | 24.47 |
| Os03t0151800-02 | Rice | cytosol, extracellular, nucleus, plasma membrane, plastid | 93.85 | 22.62 |
| Os08t0556550-01 | Rice | cytosol | 12.31 | 22.43 |
| CDY41581 | Canola | cytosol | 87.69 | 21.16 |
| KRG96011 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 87.69 | 21.16 |
| Bra001297.1-P | Field mustard | cytosol | 87.69 | 21.14 |
| CDX73996 | Canola | cytosol | 87.69 | 21.14 |
| CDY07941 | Canola | cytosol | 87.69 | 21.14 |
| AT5G03340.1 | Thale cress | cytosol | 87.69 | 21.11 |
| CDY41316 | Canola | cytosol, extracellular | 87.69 | 21.11 |
| Bra034089.1-P | Field mustard | cytosol | 87.69 | 21.11 |
| CDY22207 | Canola | cytosol | 87.69 | 21.11 |
| CDY54618 | Canola | cytosol | 87.18 | 21.04 |
| KRH67721 | Soybean | endoplasmic reticulum, nucleus | 87.18 | 21.04 |
| Bra029795.1-P | Field mustard | cytosol | 87.18 | 21.01 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 86.67 | 20.97 |
| Solyc10g084050.1.1 | Tomato | cytosol, nucleus, plastid, unclear | 86.67 | 20.92 |
| PGSC0003DMT400027096 | Potato | cytosol | 86.67 | 20.92 |
| KRH32530 | Soybean | endoplasmic reticulum, mitochondrion | 86.67 | 20.79 |
| KRH19916 | Soybean | endoplasmic reticulum, mitochondrion | 86.15 | 20.72 |
| AT3G09840.1 | Thale cress | cytosol | 85.64 | 20.64 |
| PGSC0003DMT400055513 | Potato | cytosol | 84.62 | 20.45 |
| PGSC0003DMT400031321 | Potato | cytosol | 84.1 | 20.37 |
| Solyc06g074980.2.1 | Tomato | nucleus | 84.1 | 20.37 |
| CDY13308 | Canola | cytosol | 84.62 | 20.37 |
| Bra003123.1-P | Field mustard | cytosol | 84.62 | 20.37 |
| AT3G53230.1 | Thale cress | cytosol | 85.13 | 20.37 |
| Bra006978.1-P | Field mustard | cytosol | 84.62 | 20.35 |
| KRH26511 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 84.1 | 20.32 |
| Solyc11g069720.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 83.59 | 20.25 |
| PGSC0003DMT400050662 | Potato | cytosol | 83.59 | 20.25 |
| KRH22853 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 83.59 | 20.2 |
| CDY11249 | Canola | cytosol | 82.56 | 20.18 |
| Solyc09g008070.2.1 | Tomato | cytosol, unclear | 82.56 | 19.93 |
| CDX80862 | Canola | cytosol, plastid | 82.56 | 19.9 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 76.92 | 19.61 |
| KRH30601 | Soybean | cytosol | 80.51 | 19.48 |
| CDX67563 | Canola | cytosol | 84.62 | 18.77 |
| CDX73571 | Canola | cytosol | 68.21 | 17.9 |
| CDX78154 | Canola | cytosol | 67.69 | 17.74 |
| KRH25081 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 61.03 | 16.44 |
| Bra005733.1-P | Field mustard | cytosol | 87.18 | 15.4 |
| Zm00001d032117_P001 | Maize | cytosol | 23.08 | 14.06 |
| Os06t0607800-01 | Rice | nucleus | 24.1 | 11.72 |
| Os02t0199900-01 | Rice | nucleus, plasma membrane | 23.59 | 11.5 |
| Os04t0284600-01 | Rice | cytosol | 21.03 | 11.48 |
| Os08t0413000-00 | Rice | mitochondrion | 52.31 | 11.28 |
| Os02t0325100-01 | Rice | plastid | 24.1 | 11.22 |
| Os05t0376200-00 | Rice | cytosol | 22.05 | 11.0 |
| Os06t0192600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 23.59 | 10.8 |
| Os06t0173100-01 | Rice | cytosol, nucleus, plasma membrane | 23.08 | 10.49 |
| Os02t0803700-01 | Rice | cytosol, nucleus, plastid | 23.08 | 10.49 |
| Os02t0205300-01 | Rice | cytosol | 22.56 | 10.38 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 23.59 | 10.27 |
| Os03t0298400-01 | Rice | plasma membrane | 23.59 | 10.22 |
| Os06t0600100-01 | Rice | plasma membrane | 22.05 | 10.17 |
| Os09t0560200-01 | Rice | cytosol, mitochondrion | 20.0 | 8.71 |
| Os04t0498800-01 | Rice | cytosol | 25.64 | 8.65 |
| Os06t0109400-01 | Rice | cytosol | 27.69 | 7.01 |
| KRG94277 | Soybean | cytosol | 5.64 | 5.31 |
| Os04t0617600-01 | Rice | cytosol | 25.13 | 5.21 |
| Os06t0600301-00 | Rice | plasma membrane | 5.13 | 4.42 |
| GSMUA_Achr3P00260_001 | Banana | cytosol | 5.64 | 2.25 |
| KRH45638 | Soybean | cytosol | 2.56 | 1.56 |
| KRG99061 | Soybean | cytosol | 0.0 | 0.0 |
| Os11t0220400-01 | Rice | mitochondrion | 0.0 | 0.0 |
| Os08t0556400-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | MapMan:35.1 | EMBL:AK058908 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core |
| UniProt:B7E390 | ProteinID:BAT11045.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051301 | EnsemblPlantsGene:Os10g0442600 | EnsemblPlants:Os10t0442600-01 | InterPro:P-loop_NTPase |
| PFAM:PF00004 | PFAM:PF09336 | ScanProsite:PS00674 | PANTHER:PTHR23077 | PANTHER:PTHR23077:SF122 | SUPFAM:SSF52540 |
| UniParc:UPI000188AC8E | InterPro:Vps4_C | SEG:seg | : | : | : |
Description
CELL DIVISION CONTROL 48ESimilar to Cell division control protein 48-like protein e (Fragment). (Os10t0442600-01)
Coordinates
chr10:+:15914701..15915920
Molecular Weight (calculated)
21818.6 Da
IEP (calculated)
4.624
GRAVY (calculated)
-0.559
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGMNAKKTV FIIGATNRPD IIDPALLRPG RLDQLIYIPL PDEQSRLQIF KACLRKSPVA KDVDLNALAK YTQGFSGADI TEICQRACKY AIRENIEKDI
101: ERERRSKENP EAMEEDEVDD IAEIKAAHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFERT EAGAGAAADP FASAAAVADD DDLYS
101: ERERRSKENP EAMEEDEVDD IAEIKAAHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFERT EAGAGAAADP FASAAAVADD DDLYS
001: MSTPAESSDS KSKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPATM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDDVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWN DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGSGGDGGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKAALRKSPI AKDVDIGALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFEN SAGSGATTGV ADPFATSAAA
801: AGDDDDLYN
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDDVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWN DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGSGGDGGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKAALRKSPI AKDVDIGALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFEN SAGSGATTGV ADPFATSAAA
801: AGDDDDLYN
Arabidopsis Description
CDC48AAT3G09840 protein [Source:UniProtKB/TrEMBL;Acc:B9DI55]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.