Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73996 | Canola | cytosol | 99.63 | 99.63 |
| Bra034089.1-P | Field mustard | cytosol | 99.38 | 99.26 |
| CDY22207 | Canola | cytosol | 99.26 | 99.14 |
| CDY41316 | Canola | cytosol, extracellular | 99.26 | 99.14 |
| CDY54618 | Canola | cytosol | 98.76 | 98.89 |
| CDY41581 | Canola | cytosol | 98.39 | 98.51 |
| AT3G09840.1 | Thale cress | cytosol | 98.02 | 98.02 |
| CDY11249 | Canola | cytosol | 93.82 | 95.11 |
| CDX80862 | Canola | cytosol, plastid | 93.45 | 93.45 |
| PGSC0003DMT400027096 | Potato | cytosol | 92.58 | 92.7 |
| Solyc10g084050.1.1 | Tomato | cytosol, nucleus, plastid, unclear | 92.46 | 92.57 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 92.21 | 92.56 |
| PGSC0003DMT400031321 | Potato | cytosol | 92.09 | 92.55 |
| Solyc06g074980.2.1 | Tomato | nucleus | 92.09 | 92.55 |
| PGSC0003DMT400055513 | Potato | cytosol | 92.21 | 92.44 |
| PGSC0003DMT400050662 | Potato | cytosol | 91.47 | 91.93 |
| Solyc11g069720.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 91.47 | 91.93 |
| GSMUA_Achr5P15500_001 | Banana | cytosol, plasma membrane | 91.59 | 91.59 |
| GSMUA_Achr4P26800_001 | Banana | cytosol | 90.98 | 90.98 |
| Solyc09g008070.2.1 | Tomato | cytosol, unclear | 90.85 | 90.97 |
| Zm00001d027707_P001 | Maize | cytosol, plasma membrane | 90.73 | 90.95 |
| Zm00001d048409_P001 | Maize | cytosol | 90.36 | 90.92 |
| Zm00001d032859_P006 | Maize | plasma membrane | 90.98 | 90.86 |
| Os03t0151800-02 | Rice | cytosol, extracellular, nucleus, plasma membrane, plastid | 90.73 | 90.73 |
| Zm00001d014124_P001 | Maize | cytosol, plasma membrane | 90.85 | 90.63 |
| CDY13308 | Canola | cytosol | 90.73 | 90.62 |
| CDX78154 | Canola | cytosol | 81.83 | 88.98 |
| CDX73571 | Canola | cytosol | 81.09 | 88.29 |
| Os10t0442600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 21.14 | 87.69 |
| GSMUA_Achr9P23550_001 | Banana | mitochondrion | 87.02 | 87.34 |
| TraesCSU01G001000.1 | Wheat | cytosol | 86.03 | 86.67 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 79.85 | 84.44 |
| TraesCS3B01G154400.1 | Wheat | cytosol | 82.08 | 84.26 |
| TraesCS1B01G419200.1 | Wheat | cytosol | 81.83 | 83.9 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 81.71 | 83.88 |
| TraesCS3A01G144500.1 | Wheat | cytosol | 55.13 | 83.68 |
| TraesCS3B01G171200.1 | Wheat | cytosol | 81.46 | 83.63 |
| TraesCS3A01G145100.1 | Wheat | cytosol | 81.46 | 83.52 |
| TraesCS1B01G259200.1 | Wheat | cytosol | 81.33 | 83.4 |
| TraesCS3B01G171400.1 | Wheat | cytosol | 74.78 | 83.22 |
| TraesCS3B01G172100.1 | Wheat | cytosol | 81.21 | 83.16 |
| TraesCS3B01G172000.1 | Wheat | cytosol | 80.59 | 83.16 |
| TraesCS3A01G145000.1 | Wheat | cytosol | 71.2 | 82.76 |
| KXG40206 | Sorghum | cytosol | 79.98 | 82.74 |
| EER95525 | Sorghum | cytosol | 79.73 | 82.69 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 81.71 | 81.81 |
| CDX67563 | Canola | cytosol | 88.5 | 81.46 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 81.71 | 81.2 |
| TraesCS3B01G171300.1 | Wheat | cytosol | 72.68 | 80.66 |
| TraesCS1A01G248500.1 | Wheat | cytosol | 58.96 | 79.9 |
| TraesCS5B01G323100.1 | Wheat | cytosol | 57.23 | 79.69 |
| Zm00001d032117_P001 | Maize | cytosol | 27.19 | 68.75 |
| CDY25624 | Canola | cytosol | 14.46 | 46.61 |
| CDY20370 | Canola | cytosol | 12.61 | 37.92 |
| CDX74308 | Canola | mitochondrion | 32.39 | 37.11 |
| CDY39032 | Canola | cytosol | 11.5 | 37.05 |
| CDY04161 | Canola | cytosol | 27.56 | 36.98 |
| CDX84794 | Canola | cytosol | 31.64 | 34.45 |
| CDY23949 | Canola | cytosol | 30.78 | 34.34 |
| CDX71534 | Canola | cytosol | 16.93 | 34.34 |
| CDY22373 | Canola | cytosol | 16.93 | 34.34 |
| CDX91939 | Canola | cytosol, mitochondrion | 32.51 | 33.85 |
| CDY02428 | Canola | cytosol, extracellular | 16.69 | 33.83 |
| CDY25226 | Canola | cytosol | 16.69 | 33.83 |
| CDY30665 | Canola | cytosol | 17.43 | 33.1 |
| CDX74842 | Canola | cytosol | 16.81 | 33.01 |
| CDY24076 | Canola | cytosol | 17.31 | 32.86 |
| CDY36602 | Canola | cytosol | 17.31 | 32.86 |
| CDY02494 | Canola | cytosol | 17.18 | 32.63 |
| CDY25685 | Canola | cytosol | 17.18 | 32.63 |
| CDY45794 | Canola | nucleus | 32.01 | 32.5 |
| CDY20470 | Canola | cytosol, plasma membrane | 16.93 | 32.16 |
| CDY33111 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 27.69 | 31.28 |
| CDX88666 | Canola | cytosol | 15.2 | 30.45 |
| CDY02806 | Canola | cytosol | 15.2 | 30.45 |
| CDY32714 | Canola | cytosol | 15.2 | 30.45 |
| CDY32995 | Canola | cytosol, extracellular | 15.2 | 30.45 |
| CDY43865 | Canola | cytosol | 15.2 | 30.45 |
| CDY58566 | Canola | cytosol | 15.2 | 30.45 |
| CDY39033 | Canola | cytosol | 15.08 | 30.05 |
| CDX89698 | Canola | endoplasmic reticulum | 25.71 | 29.93 |
| CDY35832 | Canola | cytosol | 15.33 | 29.59 |
| CDX70903 | Canola | cytosol | 15.2 | 29.57 |
| CDY05176 | Canola | cytosol | 15.33 | 29.25 |
| CDY18782 | Canola | cytosol | 15.33 | 29.25 |
| CDY18801 | Canola | cytosol | 15.33 | 29.25 |
| CDY27761 | Canola | cytosol | 15.33 | 29.25 |
| CDY06847 | Canola | cytosol | 15.95 | 29.12 |
| CDX74142 | Canola | cytosol | 15.2 | 29.01 |
| CDY40714 | Canola | cytosol | 15.2 | 29.01 |
| CDX92914 | Canola | cytosol, extracellular | 15.82 | 28.89 |
| CDY35245 | Canola | cytosol | 15.82 | 28.89 |
| CDY30663 | Canola | cytosol | 15.33 | 28.7 |
| CDX97472 | Canola | cytosol | 15.7 | 28.54 |
| CDY14224 | Canola | cytosol | 15.7 | 28.54 |
| CDX72118 | Canola | plastid | 33.25 | 28.5 |
| CDY08201 | Canola | cytosol | 12.48 | 28.45 |
| CDY20371 | Canola | cytosol, plastid | 15.08 | 27.73 |
| CDX89923 | Canola | cytosol | 25.22 | 26.7 |
| CDY56774 | Canola | plastid | 33.0 | 26.23 |
| CDY59958 | Canola | cytosol | 11.5 | 25.55 |
| CDY32490 | Canola | mitochondrion | 28.06 | 24.49 |
| CDY37450 | Canola | mitochondrion | 27.94 | 24.43 |
| CDX88865 | Canola | cytosol, extracellular | 16.07 | 20.67 |
| CDY02982 | Canola | cytosol | 28.55 | 19.59 |
| CDY18139 | Canola | extracellular, vacuole | 7.17 | 19.14 |
| CDX69950 | Canola | cytosol | 25.71 | 19.05 |
| CDY62119 | Canola | cytosol | 25.71 | 19.05 |
| CDY42324 | Canola | cytosol, extracellular | 16.07 | 18.13 |
| CDY44958 | Canola | cytosol, plasma membrane | 16.07 | 18.03 |
| CDY69655 | Canola | cytosol, nucleus | 0.99 | 3.52 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.4.2.1 | Gene3D:2.40.40.20 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | GO:A0A078F3G8 |
| UniProt:A0A078F3G8 | InterPro:AAA+_ATPase | InterPro:AAA_ATPase_CDC48 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf |
| InterPro:CDC48_domain_2-like_sf | InterPro:CDC4_N-term_subdom | EnsemblPlants:CDY07941 | ProteinID:CDY07941 | ProteinID:CDY07941.1 | InterPro:Cdc48_dom2 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| EnsemblPlantsGene:GSBRNA2T00125146001 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02359 | PFAM:PF02933 | ScanProsite:PS00674 |
| PANTHER:PTHR23077 | PANTHER:PTHR23077:SF127 | SMART:SM00382 | SMART:SM01072 | SMART:SM01073 | SUPFAM:SSF50692 |
| SUPFAM:SSF52540 | SUPFAM:SSF54585 | TIGRFAMs:TIGR01243 | UniParc:UPI0004EE8519 | SEG:seg | : |
Description
BnaC03g35820DBnaC03g35820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3G8]
Coordinates
chrLK031982:+:217257..220784
Molecular Weight (calculated)
89513.5 Da
IEP (calculated)
4.848
GRAVY (calculated)
-0.376
Length
809 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNPAESSDS KSKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPATM EKLQLFRGDT ILIKGKKRKD TVCIALADES CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGNRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWD DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGGGGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKACLRKSPV AKDVDINALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEREKRRSLN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFET NAGSGATTGV ADPFATSAAA
801: SADDDDLYN
101: GDVISVHQCP DVKYGNRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWD DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGGGGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKACLRKSPV AKDVDINALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEREKRRSLN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFET NAGSGATTGV ADPFATSAAA
801: SADDDDLYN
001: MSTPAESSDS KSKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPATM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDDVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWN DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGSGGDGGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKAALRKSPI AKDVDIGALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFEN SAGSGATTGV ADPFATSAAA
801: AGDDDDLYN
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDDVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWN DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGSGGDGGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKAALRKSPI AKDVDIGALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFEN SAGSGATTGV ADPFATSAAA
801: AGDDDDLYN
Arabidopsis Description
CDC48AAT3G09840 protein [Source:UniProtKB/TrEMBL;Acc:B9DI55]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.