CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 29364282

msms PMID: 29364282 doi

S Pahlow, A Ostendorp, L Krüßel, J Kehr

Molecular Plant Genetics, Universität Hamburg., Molecular Plant Genetics, Universität Hamburg; julia.kehr@uni-hamburg.de.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68299
CDX72833
CDX73996
CDX96350
CDY07941
CDY22207
CDY36679
CDY41316
CDY41581
CDY54618

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	CDX68299	AT1G71830.1	15592873
AT3G09840.1	CDX72833	AT1G71830.1	15592873
AT3G09840.1	CDX96350	AT1G71830.1	15592873
AT3G09840.1	CDY36679	AT1G71830.1	15592873
AT3G09840.1	CDX68299	AT1G71830.1	16473966
AT3G09840.1	CDX72833	AT1G71830.1	16473966
AT3G09840.1	CDX96350	AT1G71830.1	16473966
AT3G09840.1	CDY36679	AT1G71830.1	16473966
AT3G09840.1	CDX68299	AT1G71830.1	16621602
AT3G09840.1	CDX72833	AT1G71830.1	16621602
AT3G09840.1	CDX96350	AT1G71830.1	16621602
AT3G09840.1	CDY36679	AT1G71830.1	16621602
AT3G09840.1	CDX68299	AT1G71830.1	17693538
AT3G09840.1	CDX72833	AT1G71830.1	17693538
AT3G09840.1	CDX96350	AT1G71830.1	17693538
AT3G09840.1	CDY36679	AT1G71830.1	17693538
AT3G09840.1	CDX73996	AT3G09840.1	15592873
AT3G09840.1	CDY07941	AT3G09840.1	15592873
AT3G09840.1	CDY22207	AT3G09840.1	15592873
AT3G09840.1	CDY41316	AT3G09840.1	15592873
AT3G09840.1	CDY41581	AT3G09840.1	15592873
AT3G09840.1	CDY54618	AT3G09840.1	15592873
AT3G09840.1	CDX73996	AT3G09840.1	16621602
AT3G09840.1	CDY07941	AT3G09840.1	16621602
AT3G09840.1	CDY22207	AT3G09840.1	16621602
AT3G09840.1	CDY41316	AT3G09840.1	16621602
AT3G09840.1	CDY41581	AT3G09840.1	16621602
AT3G09840.1	CDY54618	AT3G09840.1	16621602
AT3G09840.1	CDX73996	AT3G09840.1	17693538
AT3G09840.1	CDY07941	AT3G09840.1	17693538
AT3G09840.1	CDY22207	AT3G09840.1	17693538
AT3G09840.1	CDY41316	AT3G09840.1	17693538
AT3G09840.1	CDY41581	AT3G09840.1	17693538
AT3G09840.1	CDY54618	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22207	Canola	cytosol	99.75	99.75
CDY54618	Canola	cytosol	99.14	99.38
Bra001297.1-P	Field mustard	cytosol	99.14	99.26
CDX73996	Canola	cytosol	99.14	99.26
CDY07941	Canola	cytosol	99.14	99.26
CDY41581	Canola	cytosol	98.64	98.89
AT3G09840.1	Thale cress	cytosol	98.02	98.15
CDY11249	Canola	cytosol	93.7	95.11
CDX80862	Canola	cytosol, plastid	93.33	93.45
PGSC0003DMT400027096	Potato	cytosol	92.72	92.95
VIT_08s0040g01480.t01	Wine grape	cytosol	92.47	92.93
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	92.59	92.82
PGSC0003DMT400031321	Potato	cytosol	91.98	92.55
Solyc06g074980.2.1	Tomato	nucleus	91.98	92.55
PGSC0003DMT400055513	Potato	cytosol	91.98	92.32
PGSC0003DMT400050662	Potato	cytosol	91.11	91.68
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	91.11	91.68
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	91.48	91.59
GSMUA_Achr4P26800_001	Banana	cytosol	91.11	91.22
Solyc09g008070.2.1	Tomato	cytosol, unclear	90.99	91.21
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	90.99	91.1
CDY13308	Canola	cytosol	90.99	90.99
Zm00001d027707_P001	Maize	cytosol, plasma membrane	90.62	90.95
Zm00001d048409_P001	Maize	cytosol	90.0	90.67
Zm00001d014124_P001	Maize	cytosol, plasma membrane	90.74	90.63
Zm00001d032859_P006	Maize	plasma membrane	90.62	90.62
CDX78154	Canola	cytosol	81.98	89.25
CDX73571	Canola	cytosol	81.11	88.43
GSMUA_Achr9P23550_001	Banana	mitochondrion	87.28	87.72
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	21.11	87.69
TraesCSU01G001000.1	Wheat	cytosol	86.3	87.05
VIT_06s0061g00340.t01	Wine grape	cytosol	80.0	84.71
TraesCS3B01G154400.1	Wheat	cytosol	82.22	84.52
TraesCS1B01G419200.1	Wheat	cytosol	81.73	83.9
HORVU0Hr1G006340.1	Barley	cytosol	81.6	83.88
TraesCS3A01G144500.1	Wheat	cytosol	55.06	83.68
TraesCS3B01G171200.1	Wheat	cytosol	81.23	83.5
TraesCS3A01G145100.1	Wheat	cytosol	81.23	83.4
TraesCS1B01G259200.1	Wheat	cytosol	81.11	83.27
TraesCS3B01G172100.1	Wheat	cytosol	81.11	83.16
TraesCS3B01G172000.1	Wheat	cytosol	80.49	83.16
TraesCS3B01G171400.1	Wheat	cytosol	74.57	83.08
TraesCS3A01G145000.1	Wheat	cytosol	71.11	82.76
KXG40206	Sorghum	cytosol	79.88	82.74
EER95525	Sorghum	cytosol	79.63	82.69
HORVU3Hr1G029450.1	Barley	cytosol	81.6	81.81
CDX67563	Canola	cytosol	88.77	81.8
HORVU3Hr1G029440.1	Barley	cytosol	81.6	81.2
TraesCS3B01G171300.1	Wheat	cytosol	72.59	80.66
TraesCS1A01G248500.1	Wheat	cytosol	58.89	79.9
TraesCS5B01G323100.1	Wheat	cytosol	57.04	79.52
Zm00001d032117_P001	Maize	cytosol	27.16	68.75
CDY25624	Canola	cytosol	14.44	46.61
CDY20370	Canola	cytosol	12.59	37.92
CDX74308	Canola	mitochondrion	32.35	37.11
CDY39032	Canola	cytosol	11.48	37.05
CDY04161	Canola	cytosol	27.53	36.98
CDX84794	Canola	cytosol	31.6	34.45
CDY23949	Canola	cytosol	30.74	34.34
CDX71534	Canola	cytosol	16.91	34.34
CDY22373	Canola	cytosol	16.91	34.34
CDX91939	Canola	cytosol, mitochondrion	32.47	33.85
CDY02428	Canola	cytosol, extracellular	16.67	33.83
CDY25226	Canola	cytosol	16.67	33.83
CDY30665	Canola	cytosol	17.41	33.1
CDX74842	Canola	cytosol	16.79	33.01
CDY24076	Canola	cytosol	17.28	32.86
CDY36602	Canola	cytosol	17.28	32.86
CDY02494	Canola	cytosol	17.16	32.63
CDY25685	Canola	cytosol	17.16	32.63
CDY45794	Canola	nucleus	31.98	32.5
CDY20470	Canola	cytosol, plasma membrane	16.91	32.16
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.65	31.28
CDX88666	Canola	cytosol	15.19	30.45
CDY02806	Canola	cytosol	15.19	30.45
CDY32714	Canola	cytosol	15.19	30.45
CDY32995	Canola	cytosol, extracellular	15.19	30.45
CDY43865	Canola	cytosol	15.19	30.45
CDY58566	Canola	cytosol	15.19	30.45
CDY39033	Canola	cytosol	15.06	30.05
CDX89698	Canola	endoplasmic reticulum	25.68	29.93
CDY35832	Canola	cytosol	15.31	29.59
CDX70903	Canola	cytosol	15.19	29.57
CDY05176	Canola	cytosol	15.31	29.25
CDY18782	Canola	cytosol	15.31	29.25
CDY18801	Canola	cytosol	15.31	29.25
CDY27761	Canola	cytosol	15.31	29.25
CDY06847	Canola	cytosol	15.93	29.12
CDX74142	Canola	cytosol	15.19	29.01
CDY40714	Canola	cytosol	15.19	29.01
CDX92914	Canola	cytosol, extracellular	15.8	28.89
CDY35245	Canola	cytosol	15.8	28.89
CDY30663	Canola	cytosol	15.31	28.7
CDX97472	Canola	cytosol	15.68	28.54
CDY14224	Canola	cytosol	15.68	28.54
CDX72118	Canola	plastid	33.21	28.5
CDY08201	Canola	cytosol	12.47	28.45
CDY20371	Canola	cytosol, plastid	15.06	27.73
CDX89923	Canola	cytosol	25.19	26.7
CDY56774	Canola	plastid	32.96	26.23
CDY59958	Canola	cytosol	11.48	25.55
CDY37450	Canola	mitochondrion	28.02	24.54
CDY32490	Canola	mitochondrion	28.02	24.49
CDX88865	Canola	cytosol, extracellular	16.05	20.67
CDY02982	Canola	cytosol	28.52	19.59
CDY18139	Canola	extracellular, vacuole	7.16	19.14
CDX69950	Canola	cytosol	25.56	18.96
CDY62119	Canola	cytosol	25.56	18.96
CDY42324	Canola	cytosol, extracellular	16.05	18.13
CDY44958	Canola	cytosol, plasma membrane	16.05	18.03
CDY69655	Canola	cytosol, nucleus	0.99	3.52

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	GO:A0A078HUE0
UniProt:A0A078HUE0	InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf
InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	EnsemblPlants:CDY41316	ProteinID:CDY41316	ProteinID:CDY41316.1	InterPro:Cdc48_dom2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00072864001	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF127	SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692
SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	UniParc:UPI0004EEF95B	SEG:seg	:

Description

BnaA01g32030DBnaA01g32030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUE0]

Coordinates

chrLK032495:+:67230..70445

Molecular Weight (calculated)

89570.5 Da

IEP (calculated)

4.823

GRAVY (calculated)

-0.378

Length

810 amino acids

Sequence
(BLAST)

001: MSNPAESSDS KSKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPATM EKLQLFRGDT ILIKGKKRKD TICIALADDS CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGQRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWD DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGGGGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKACLRKSPV AKDVDINALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFET NAAGSGATTG VADPFATSAA
801: AAADDDDLYN

Best Arabidopsis Sequence Match ( AT3G09840.1 )
(BLAST)

001: MSTPAESSDS KSKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPATM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDDVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWN DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGSGGDGGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKAALRKSPI AKDVDIGALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFEN SAGSGATTGV ADPFATSAAA
801: AGDDDDLYN

Arabidopsis Description

CDC48AAT3G09840 protein [Source:UniProtKB/TrEMBL;Acc:B9DI55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.