CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11249	Canola	cytosol	97.16	98.5
AT5G03340.1	Thale cress	cytosol	94.93	94.81
CDX73996	Canola	cytosol	93.57	93.57
CDY22207	Canola	cytosol	93.57	93.46
CDY07941	Canola	cytosol	93.45	93.45
CDY54618	Canola	cytosol	93.33	93.44
CDY41316	Canola	cytosol, extracellular	93.45	93.33
CDY41581	Canola	cytosol	92.95	93.07
VIT_08s0040g01480.t01	Wine grape	cytosol	91.59	91.94
PGSC0003DMT400027096	Potato	cytosol	91.35	91.46
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	91.22	91.34
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	91.1	91.1
Solyc06g074980.2.1	Tomato	nucleus	90.61	91.06
PGSC0003DMT400055513	Potato	cytosol	90.73	90.95
Zm00001d027707_P001	Maize	cytosol, plasma membrane	90.61	90.83
PGSC0003DMT400031321	Potato	cytosol	90.36	90.81
Zm00001d048409_P001	Maize	cytosol	90.23	90.8
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	89.99	90.43
Zm00001d014124_P001	Maize	cytosol, plasma membrane	90.61	90.38
CDY13308	Canola	cytosol	90.48	90.37
PGSC0003DMT400050662	Potato	cytosol	89.86	90.31
Zm00001d032859_P006	Maize	plasma membrane	90.36	90.25
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	89.99	89.99
GSMUA_Achr4P26800_001	Banana	cytosol	89.74	89.74
Solyc09g008070.2.1	Tomato	cytosol, unclear	89.37	89.48
CDX78154	Canola	cytosol	80.96	88.04
CDX73571	Canola	cytosol	80.1	87.21
GSMUA_Achr9P23550_001	Banana	mitochondrion	85.78	86.1
TraesCSU01G001000.1	Wheat	cytosol	85.17	85.8
VIT_06s0061g00340.t01	Wine grape	cytosol	78.86	83.4
TraesCS3B01G154400.1	Wheat	cytosol	80.96	83.12
TraesCS1B01G419200.1	Wheat	cytosol	80.84	82.89
TraesCS3A01G144500.1	Wheat	cytosol	54.51	82.74
HORVU0Hr1G006340.1	Barley	cytosol	80.47	82.61
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	19.9	82.56
TraesCS3B01G171400.1	Wheat	cytosol	74.04	82.39
TraesCS1B01G259200.1	Wheat	cytosol	80.35	82.38
TraesCS3B01G171200.1	Wheat	cytosol	80.22	82.36
TraesCS3A01G145100.1	Wheat	cytosol	80.22	82.26
TraesCS3A01G145000.1	Wheat	cytosol	70.58	82.04
EER95525	Sorghum	cytosol	78.99	81.92
TraesCS3B01G172100.1	Wheat	cytosol	79.98	81.9
TraesCS3B01G172000.1	Wheat	cytosol	79.36	81.89
KXG40206	Sorghum	cytosol	79.11	81.84
CDX67563	Canola	cytosol	88.13	81.11
HORVU3Hr1G029450.1	Barley	cytosol	80.47	80.57
HORVU3Hr1G029440.1	Barley	cytosol	80.47	79.98
TraesCS3B01G171300.1	Wheat	cytosol	71.94	79.84
TraesCS1A01G248500.1	Wheat	cytosol	58.34	79.06
TraesCS5B01G323100.1	Wheat	cytosol	56.74	79.0
Zm00001d032117_P001	Maize	cytosol	27.19	68.75
CDY25624	Canola	cytosol	14.34	46.22
CDY20370	Canola	cytosol	12.61	37.92
CDY39032	Canola	cytosol	11.5	37.05
CDY04161	Canola	cytosol	27.32	36.65
CDX74308	Canola	mitochondrion	31.64	36.26
CDX71534	Canola	cytosol	17.06	34.59
CDY22373	Canola	cytosol	17.06	34.59
CDY02428	Canola	cytosol, extracellular	16.81	34.09
CDY25226	Canola	cytosol	16.81	34.09
CDY23949	Canola	cytosol	30.28	33.79
CDX84794	Canola	cytosol	31.03	33.78
CDX91939	Canola	cytosol, mitochondrion	31.77	33.08
CDX74842	Canola	cytosol	16.69	32.77
CDY30665	Canola	cytosol	17.18	32.63
CDY24076	Canola	cytosol	17.06	32.39
CDY36602	Canola	cytosol	17.06	32.39
CDY02494	Canola	cytosol	16.93	32.16
CDY25685	Canola	cytosol	16.93	32.16
CDY20470	Canola	cytosol, plasma membrane	16.81	31.92
CDY45794	Canola	nucleus	31.4	31.87
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.44	31.01
CDX88666	Canola	cytosol	15.2	30.45
CDY02806	Canola	cytosol	15.2	30.45
CDY32714	Canola	cytosol	15.2	30.45
CDY32995	Canola	cytosol, extracellular	15.2	30.45
CDY43865	Canola	cytosol	15.2	30.45
CDY58566	Canola	cytosol	15.2	30.45
CDY39033	Canola	cytosol	15.08	30.05
CDY05176	Canola	cytosol	15.57	29.72
CDY18782	Canola	cytosol	15.57	29.72
CDY18801	Canola	cytosol	15.57	29.72
CDY27761	Canola	cytosol	15.57	29.72
CDX74142	Canola	cytosol	15.45	29.48
CDY40714	Canola	cytosol	15.45	29.48
CDX89698	Canola	endoplasmic reticulum	25.09	29.21
CDY06847	Canola	cytosol	15.95	29.12
CDY35832	Canola	cytosol	15.08	29.12
CDX70903	Canola	cytosol	14.96	29.09
CDX92914	Canola	cytosol, extracellular	15.82	28.89
CDY35245	Canola	cytosol	15.82	28.89
CDX97472	Canola	cytosol	15.7	28.54
CDY14224	Canola	cytosol	15.7	28.54
CDX72118	Canola	plastid	33.0	28.28
CDY30663	Canola	cytosol	15.08	28.24
CDY08201	Canola	cytosol	12.36	28.17
CDY20371	Canola	cytosol, plastid	15.08	27.73
CDX89923	Canola	cytosol	24.97	26.44
CDY56774	Canola	plastid	32.76	26.03
CDY59958	Canola	cytosol	11.62	25.82
CDY37450	Canola	mitochondrion	28.06	24.54
CDY32490	Canola	mitochondrion	28.06	24.49
CDX88865	Canola	cytosol, extracellular	15.82	20.35
CDY02982	Canola	cytosol	28.18	19.34
CDY18139	Canola	extracellular, vacuole	7.17	19.14
CDX69950	Canola	cytosol	25.59	18.96
CDY62119	Canola	cytosol	25.59	18.96
CDY42324	Canola	cytosol, extracellular	15.82	17.85
CDY44958	Canola	cytosol, plasma membrane	15.82	17.75
CDY69655	Canola	cytosol, nucleus	0.99	3.52

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	GO:A0A078CVU5
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdom	EnsemblPlants:CDX80862	ProteinID:CDX80862	ProteinID:CDX80862.1	InterPro:Cdc48_dom2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00134259001
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077
PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540
SUPFAM:SSF54585	TIGRFAMs:TIGR01243	UniParc:UPI0004EF2466	SEG:seg	:	:

Description

BnaC03g01160D

Coordinates

chrLK031823:-:530134..533818

Molecular Weight (calculated)

89690.0 Da

IEP (calculated)

5.037

GRAVY (calculated)

-0.349

Length

809 amino acids

Sequence
(BLAST)

001: MSRRNTNAII IMSSKPESSD SKSKKDFSTA ILERKKSPNR LVVDEAINDD NSVVSLHPNA MEKLQLFRGD TILIKGKKRK DTICIALADE SCEEPKIRMN
101: KVVRSNLRVR LGDVVSIHQC PDVKYGTRVH ILPVDDTVEG VTGNLFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSVEFKV IETDPAEYCV VAPDTEIFCE
201: GEPIKREDEE RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KMAGESESNL
301: RKAFEEAEKN APSIIFIDEI DSIAPKRDKT NGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEVG RLEVLRIHTK
401: NMKLAEDVDL ERISKDTHGY VGSDLAALCT EAALQCIREK MDVIDLEDES IDAEILNSMA VSNEHFHTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK
501: RELQETVQYP VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISVKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR
601: GSSVGDAGGA ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEDSRLSI FKACLRKSPV AKDVDVRALA KYTQGFSGAD
701: ITEICQRACK YAIRENIEKD IEREHMVDDE VAEIRAAHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG IGSEFRFDPT AAAGRTTGGA AADPFATSGA
801: AADDDDLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.