CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18139	Canola	extracellular, vacuole	31.68	79.87
CDY32490	Canola	mitochondrion	87.43	72.06
CDY37450	Canola	mitochondrion	87.04	71.89
AT1G03000.1	Thale cress	mitochondrion	86.52	70.24
KRH68139	Soybean	cytosol	47.25	53.88
VIT_07s0104g01610.t01	Wine grape	cytosol	64.79	52.77
KRG96401	Soybean	mitochondrion	62.83	52.23
Solyc06g008730.2.1	Tomato	cytosol	62.57	51.45
PGSC0003DMT400013679	Potato	cytosol	62.3	51.18
GSMUA_Achr6P20030_001	Banana	cytosol	58.77	46.48
HORVU2Hr1G104530.9	Barley	cytosol	49.35	41.29
EES12865	Sorghum	mitochondrion	50.0	41.16
TraesCS2B01G480000.3	Wheat	mitochondrion	50.13	41.05
TraesCS2A01G457600.3	Wheat	mitochondrion	49.87	40.84
TraesCS2D01G458300.3	Wheat	mitochondrion	49.87	40.84
Os04t0617600-01	Rice	cytosol	50.13	40.74
CDY25624	Canola	cytosol	12.96	39.44
CDY20370	Canola	cytosol	12.7	36.06
Zm00001d002462_P010	Maize	mitochondrion	49.61	35.65
CDY39032	Canola	cytosol	11.39	34.66
CDX92914	Canola	cytosol, extracellular	16.1	27.77
CDY04161	Canola	cytosol	21.86	27.69
CDX97472	Canola	cytosol	16.1	27.64
CDY14224	Canola	cytosol	16.1	27.64
CDY35245	Canola	cytosol	15.97	27.54
CDY06847	Canola	cytosol	15.97	27.54
CDY22373	Canola	cytosol	14.14	27.07
CDY25226	Canola	cytosol	14.14	27.07
CDX71534	Canola	cytosol	14.14	27.07
CDY02428	Canola	cytosol, extracellular	14.14	27.07
CDY39033	Canola	cytosol	14.14	26.6
CDY25685	Canola	cytosol	14.53	26.06
CDY02494	Canola	cytosol	14.53	26.06
CDX74842	Canola	cytosol	14.01	25.97
CDX70903	Canola	cytosol	14.14	25.96
CDY30665	Canola	cytosol	14.4	25.82
CDY24076	Canola	cytosol	14.4	25.82
CDY36602	Canola	cytosol	14.4	25.82
CDY35832	Canola	cytosol	14.14	25.78
CDY20470	Canola	cytosol, plasma membrane	14.27	25.59
CDY41581	Canola	cytosol	26.83	25.37
CDY54618	Canola	cytosol	26.83	25.37
CDY11249	Canola	cytosol	26.44	25.31
CDY43865	Canola	cytosol	13.35	25.25
CDY58566	Canola	cytosol	13.35	25.25
CDY32995	Canola	cytosol, extracellular	13.35	25.25
CDY32714	Canola	cytosol	13.35	25.25
CDX88666	Canola	cytosol	13.35	25.25
CDY02806	Canola	cytosol	13.35	25.25
CDX73996	Canola	cytosol	26.7	25.22
CDY07941	Canola	cytosol	26.7	25.22
CDY22207	Canola	cytosol	26.7	25.19
CDY41316	Canola	cytosol, extracellular	26.7	25.19
CDY27761	Canola	cytosol	13.87	25.0
CDY05176	Canola	cytosol	13.87	25.0
CDY18782	Canola	cytosol	13.87	25.0
CDY18801	Canola	cytosol	13.87	25.0
CDX74142	Canola	cytosol	13.87	25.0
CDY40714	Canola	cytosol	13.87	25.0
CDX80862	Canola	cytosol, plastid	26.44	24.97
CDY13308	Canola	cytosol	26.31	24.81
CDY20371	Canola	cytosol, plastid	14.27	24.77
CDY59958	Canola	cytosol	11.78	24.73
CDX74308	Canola	mitochondrion	22.77	24.65
CDY23949	Canola	cytosol	23.04	24.28
CDX84794	Canola	cytosol	23.43	24.09
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	22.51	24.02
CDY30663	Canola	cytosol	13.35	23.61
CDY08201	Canola	cytosol	10.86	23.38
CDY45794	Canola	nucleus	24.21	23.21
CDX91939	Canola	cytosol, mitochondrion	23.43	23.04
CDX78154	Canola	cytosol	22.38	22.98
CDX67563	Canola	cytosol	26.44	22.98
CDX73571	Canola	cytosol	22.25	22.88
CDX72118	Canola	plastid	25.26	20.44
CDX89698	Canola	endoplasmic reticulum	18.19	20.0
CDY56774	Canola	plastid	25.52	19.16
CDX88865	Canola	cytosol, extracellular	14.01	17.01
CDY62119	Canola	cytosol	22.91	16.03
CDX69950	Canola	cytosol	22.64	15.84
CDY42324	Canola	cytosol, extracellular	14.4	15.34
CDY44958	Canola	cytosol, plasma membrane	14.27	15.12
CDY02982	Canola	cytosol	21.47	13.91
CDY69655	Canola	cytosol, nucleus	0.39	1.32

Protein Annotations

Gene3D:1.10.8.60	MapMan:23.4.1.5.1.2	Gene3D:3.40.50.300	GO:A0A078DRT0	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	EnsemblPlants:CDX89923	ProteinID:CDX89923	ProteinID:CDX89923.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00150407001	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF9	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0004EF29BF	SEG:seg

Description

BnaA10g01590D

Coordinates

chrLK031861:+:793511..797234

Molecular Weight (calculated)

83451.2 Da

IEP (calculated)

4.854

GRAVY (calculated)

-0.206

Length

764 amino acids

Sequence
(BLAST)

001: MQICWRVIFS ASPDPLPPRG GENVSDSKFD SFDDSALVGL STQSLKRLSI NAGSLVVINN IDISIQRIAQ VVVLDPPPKT TTLDDASLVL DSLHTMLVFP
101: TYDLMMTQQL LSQESLVHRG NEVLEKYFVA KFDEGESAVI AMEPSNERFL RVSHYQTALV LGGTVSSGLP PDLLVSRSKV PMPLQEDAVN VLASVLSPPL
201: CPSALSSKLR VAVLLHGLPG CGKRTVVNYV ARRLGLHVVE YSCHSLLSSS ERKTSTVLAQ TFNMARRYAP TILLLRHFDV FKNLGSQDGS QGDRVGVASE
301: IASVIRELTE PVSNGEYSSM EEESNDNSSE DEVGKFRGHQ VLLIASAEST EGLSPTIRRC FSHEIRMGSL NDEQRSEMLS QSLQGVSQLL NTSSDEFVKE
401: LVGQTSGFLP RDLRALVADA GANLFISKDS ETEKMNSLSG DHVGDDVDQS SQLDKSNETL IPKEDFTKAL DRSKKRNESA LGAPKVPNVK WDDVGGLEDV
501: KTSILDTVQL PLLHKDLFSS GLRKRSGVLL YGPPGTGKTL LAKAVATECS LNFLSVKGPE LINMYIGESE KNVRDIFEKA RSARPCVIFF DELDSLAPAR
601: GASGDSGGVM DRVVSQMLAE IDGLSDSSQD LFIIGASNRP ELIDPALLRP GRFDKLLYVG VNADASYRER VLKALTREFK LSDKDVSLYS VAKKCPSTFT
701: GADIKVRKVL NSDSEESLPE DDPDSVVVEY VDFIKAMDQL SPSLSISELK KYEALRDQFE GRSS

Best Arabidopsis Sequence Match ( AT1G03000.1 )
(BLAST)

001: MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S

Arabidopsis Description

PEX6Peroxisome biogenesis protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.