Factsheet for Solyc06g008730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013679	Potato	cytosol	98.17	98.06
VIT_07s0104g01610.t01	Wine grape	cytosol	68.03	67.38
KRG96401	Soybean	mitochondrion	64.48	65.18
KRH68139	Soybean	cytosol	46.29	64.18
CDY37450	Canola	mitochondrion	63.51	63.78
CDY32490	Canola	mitochondrion	62.97	63.11
AT1G03000.1	Thale cress	mitochondrion	63.72	62.91
CDX89923	Canola	cytosol	51.45	62.57
GSMUA_Achr6P20030_001	Banana	cytosol	59.74	57.45
Os04t0617600-01	Rice	cytosol	53.07	52.45
TraesCS2B01G480000.3	Wheat	mitochondrion	52.42	52.2
TraesCS2D01G458300.3	Wheat	mitochondrion	52.31	52.09
EES12865	Sorghum	mitochondrion	51.88	51.94
TraesCS2A01G457600.3	Wheat	mitochondrion	52.1	51.88
HORVU2Hr1G104530.9	Barley	cytosol	49.52	50.38
Zm00001d002462_P010	Maize	mitochondrion	49.62	43.37
Bra032565.1-P	Field mustard	mitochondrion	62.54	31.17
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	6.14	30.0
Solyc06g074980.2.1	Tomato	nucleus	24.97	28.82
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	24.87	28.7
Solyc03g123730.2.1	Tomato	nucleus	13.02	28.27
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	13.02	28.21
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	24.33	27.97
Solyc09g008070.2.1	Tomato	cytosol, unclear	24.22	27.85
Solyc05g012190.2.1	Tomato	cytosol	18.19	27.66
Solyc01g109940.2.1	Tomato	nucleus	11.73	27.39
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	24.33	27.2
Solyc06g082660.2.1	Tomato	cytosol, nucleus	11.73	26.33
Solyc06g082630.2.1	Tomato	cytosol, plastid	11.73	26.33
Solyc05g018590.2.1	Tomato	nucleus	11.73	26.14
Solyc06g083620.2.1	Tomato	nucleus, plastid	12.38	25.9
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	11.63	25.9
Solyc10g054040.1.1	Tomato	cytosol, unclear	11.09	25.81
Solyc01g099760.2.1	Tomato	nucleus, plastid	11.3	24.82
Solyc01g068330.2.1	Tomato	nucleus	20.02	22.66
Solyc10g078320.1.1	Tomato	nucleus	22.93	21.58
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	21.31	17.55

Protein Annotations

Gene3D:1.10.8.60	MapMan:23.4.1.5.1.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006629	GO:GO:0006635	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0016558	UniProt:K4C3Q3	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF9	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc06g008730.2	EnsemblPlants:Solyc06g008730.2.1	UniParc:UPI0002766918	SEG:seg	:	:

Description

Peroxisome biogenesis protein 6 [Source:Projected from Arabidopsis thaliana (AT1G03000) UniProtKB/Swiss-Prot;Acc:Q8RY16]

Coordinates

chr6:-:2643190..2651308

Molecular Weight (calculated)

101909.0 Da

IEP (calculated)

6.964

GRAVY (calculated)

-0.194

Length

929 amino acids

Sequence
(BLAST)

001: MVEKRKPLIL SSTKNLLNSL LNSETQTQIS LLSTVQLRAG ILQVSKDASK ISNPKFVNFD DSALVGLTTS QLRRLCVTSG SLVLIKNVNT SQQRIGQVVV
101: LDPPSSDKVL SERSSLSHSS LTTFLLPLHS YPDCHGIKPD GEVAYLSPIL AFNLNLHLSC LRSMIHQGKE ALSPIFEAKS DNIVSGKDNT LITLGLEPLD
201: QLPKYATHLR ASFVKIPECG TVDSAKKDSS IEAEDRQELI DMELNKYFGV DRFLSRGDLF SVCINWNCKS ALCIPCSQKK QNDGSDLIYF KVVGMEPSEE
301: PVLKVNRTRT ALVLGGNVPS AVPPDFLIPR PQGSLPLQVS TVKTLASILI PPLCPSALSS KFRVVVLLHG LTGCGKRTVV KFVARQLGLH VVEYNCQSIF
401: ANSDRKTSAA LAEAFSMARR YSPTILLLRH FEAFRNLASN EGSPHDQVGM NLEVASVIKE FTEPITEDEE NYSEGKSNAH DQVKVAQPIN RHPVLLVAAA
501: DSPEGLPPTI RRCFSHEISM DPLNEEQRKE MLSQSLQHVS ELLPNTSLED LVKDLVGQTS GFMPRDLRAL VADVGANLVH SHASQDVKVV HGDLKEGSHE
601: SKPIENDGSH DSAKSLSKED VMKSLERSKK RNATALGTPK VPNVKWEDVG GLEDVKKSIL DTVQLPLLHK DLFSSGLRKR SGVLFYGPPG TGKTLLAKAV
701: ATECSLNFLS VKGPELINMY IGESEKNVRD IFQKARSARP CVIFFDELDS LAPARGASGD SGGVMDRVVS QMLAEIDGLN DSTQDLFIIG ASNRPDLIDP
801: ALLRPGRFDK LLYVGVNSEA SYRERVLKAL TRKFKLKEDI SLLSIAKRCP PNFTGADMYA LCADAWFHAA KRKALASDSD STGSEEMDVS IIVEYEDFLK
901: VLGEISPSLS MAELKKYELL REQFEGPSR

Best Arabidopsis Sequence Match ( AT1G03000.1 )
(BLAST)

001: MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S

Arabidopsis Description

PEX6Peroxisome biogenesis protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.