Factsheet for Solyc06g083620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008370.2.1
Solyc01g099760.2.1
Solyc01g111700.1.1
Solyc02g070510.2.1
Solyc02g081700.1.1
Solyc02g084920.2.1
Solyc03g113720.2.1
Solyc04g005080.2.1
Solyc04g012040.2.1
Solyc04g025710.1.1
Solyc04g051370.2.1
Solyc04g079200.2.1
Solyc04g080590.2.1
Solyc05g006520.2.1
Solyc05g009530.2.1
Solyc05g013030.1.1
Solyc05g018570.2.1
Solyc05g018590.2.1
Solyc05g053140.2.1
Solyc05g053650.2.1
Solyc06g063140.2.1
Solyc06g082630.2.1
Solyc06g082660.2.1
Solyc07g009140.2.1
Solyc07g047770.2.1
Solyc07g053650.2.1
Solyc08g016510.2.1
Solyc08g082700.2.1
Solyc09g082320.2.1
Solyc09g090720.2.1
Solyc09g091750.2.1
Solyc10g008180.1.1
Solyc11g069150.1.1
Solyc12g009140.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29040.1	Solyc05g053650.2.1	AT1G04810.1	14623884
AT4G29040.1	Solyc09g091750.2.1	AT1G04810.1	14623884
AT4G29040.1	Solyc01g111700.1.1	AT1G20200.1	14623884
AT4G29040.1	Solyc05g013030.1.1	AT1G29150.1	14623884
AT4G29040.1	Solyc06g063140.2.1	AT1G53750.1	14623884
AT4G29040.1	Solyc02g070510.2.1	AT1G53850.1	14623884
AT4G29040.1	Solyc08g016510.2.1	AT1G53850.1	14623884
AT4G29040.1	Solyc11g069150.1.1	AT1G56450.1	14623884
AT4G29040.1	Solyc04g005080.2.1	AT1G59900.1	24846764
AT4G29040.1	Solyc04g025710.1.1	AT1G59900.1	24846764
AT4G29040.1	Solyc05g006520.2.1	AT1G59900.1	24846764
AT4G29040.1	Solyc08g082700.2.1	AT1G64520.1	14623884
AT4G29040.1	Solyc01g111700.1.1	AT1G75990.1	14623884
AT4G29040.1	Solyc12g009140.1.1	AT2G05840.1	14623884
AT4G29040.1	Solyc07g053650.2.1	AT2G20580.1	14623884
AT4G29040.1	Solyc10g008180.1.1	AT2G20580.1	14623884
AT4G29040.1	Solyc05g053650.2.1	AT2G32730.1	14623884
AT4G29040.1	Solyc09g091750.2.1	AT2G32730.1	14623884
AT4G29040.1	Solyc01g099760.2.1	AT3G05530.1	14623884
AT4G29040.1	Solyc02g070510.2.1	AT3G14290.1	14623884
AT4G29040.1	Solyc08g016510.2.1	AT3G14290.1	14623884
AT4G29040.1	Solyc02g081700.1.1	AT3G22110.1	14623884
AT4G29040.1	Solyc09g082320.2.1	AT3G22630.1	14623884
AT4G29040.1	Solyc05g009530.2.1	AT3G25860.1	24846764
AT4G29040.1	Solyc03g113720.2.1	AT3G48100.1	18642946
AT4G29040.1	Solyc02g084920.2.1	AT3G60820.1	14623884
AT4G29040.1	Solyc07g009140.2.1	AT4G24820.1	14623884
AT4G29040.1	Solyc07g053650.2.1	AT4G28470.1	14623884
AT4G29040.1	Solyc10g008180.1.1	AT4G28470.1	14623884
AT4G29040.1	Solyc01g008370.2.1	AT5G05780.1	14623884
AT4G29040.1	Solyc05g018570.2.1	AT5G19990.1	14623884
AT4G29040.1	Solyc05g018590.2.1	AT5G19990.1	14623884
AT4G29040.1	Solyc05g018570.2.1	AT5G20000.1	14623884
AT4G29040.1	Solyc05g018590.2.1	AT5G20000.1	14623884
AT4G29040.1	Solyc04g079200.2.1	AT5G23540.1	14623884
AT4G29040.1	Solyc12g009140.1.1	AT5G35590.1	14623884
AT4G29040.1	Solyc07g047770.2.1	AT5G35750.1	18642946
AT4G29040.1	Solyc04g080590.2.1	AT5G42790.1	14623884
AT4G29040.1	Solyc05g053140.2.1	AT5G45620.1	14623884
AT4G29040.1	Solyc09g090720.2.1	AT5G45620.1	14623884
AT4G29040.1	Solyc06g082630.2.1	AT5G58290.1	14623884
AT4G29040.1	Solyc06g082660.2.1	AT5G58290.1	14623884
AT4G29040.1	Solyc04g012040.2.1	AT5G64760.1	14623884
AT4G29040.1	Solyc04g051370.2.1	AT5G64760.1	14623884

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051744	Potato	cytosol	99.55	99.55
KRH67524	Soybean	nucleus	97.97	97.53
KRH32292	Soybean	cytosol, nucleus	97.3	97.52
KRG95799	Soybean	cytosol, nucleus	97.75	97.31
KRH19693	Soybean	cytosol	97.07	97.29
VIT_07s0005g05160.t01	Wine grape	cytosol	97.3	97.08
AT4G29040.1	Thale cress	cytosol	95.05	95.26
AT2G20140.1	Thale cress	cytosol	94.82	95.03
GSMUA_Achr4P05850_001	Banana	cytosol	90.09	94.34
CDX97472	Canola	cytosol	94.37	94.16
CDY35245	Canola	cytosol	93.92	94.13
CDX92914	Canola	cytosol, extracellular	93.92	94.13
Bra011079.1-P	Field mustard	cytosol	93.92	94.13
CDY06847	Canola	cytosol	93.69	93.91
CDY14224	Canola	cytosol	93.92	93.71
Bra010342.1-P	Field mustard	cytosol	93.92	93.71
GSMUA_Achr4P05840_001	Banana	cytosol	88.74	93.59
Os03t0298400-01	Rice	plasma membrane	92.79	91.56
EER99961	Sorghum	cytosol	91.89	91.28
Os07t0691800-01	Rice	cytosol, nucleus, plasma membrane, plastid	91.89	91.07
Zm00001d028801_P001	Maize	cytosol, extracellular	91.44	91.03
TraesCS2D01G087900.1	Wheat	cytosol, golgi	91.67	90.65
TraesCS2B01G105700.1	Wheat	cytosol	91.67	90.65
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	91.22	90.6
HORVU4Hr1G055060.1	Barley	cytosol	91.67	90.44
TraesCS4D01G190600.1	Wheat	cytosol, golgi	91.67	90.44
TraesCS2A01G090000.1	Wheat	cytosol	91.44	90.42
TraesCS4B01G189200.1	Wheat	cytosol	91.44	90.22
TraesCS4A01G115000.1	Wheat	cytosol	91.44	90.22
Zm00001d007215_P001	Maize	cytosol	91.22	87.28
HORVU2Hr1G014770.2	Barley	cytosol, plastid	85.59	86.17
CDY59958	Canola	cytosol	61.49	75.0
HORVU1Hr1G091080.1	Barley	mitochondrion, plastid	42.12	74.5
Bra024165.1-P	Field mustard	cytosol	54.05	74.3
HORVU3Hr1G095530.3	Barley	mitochondrion, plastid	41.89	74.1
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	21.85	51.05
Solyc06g082630.2.1	Tomato	cytosol, plastid	41.89	44.93
Solyc06g082660.2.1	Tomato	cytosol, nucleus	41.89	44.93
Solyc01g109940.2.1	Tomato	nucleus	38.06	42.46
Solyc10g054040.1.1	Tomato	cytosol, unclear	37.39	41.6
Solyc01g099760.2.1	Tomato	nucleus, plastid	39.19	41.13
Solyc05g018590.2.1	Tomato	nucleus	38.29	40.77
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	38.29	40.77
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	37.39	38.69
Solyc03g123730.2.1	Tomato	nucleus	37.16	38.55
Solyc05g012190.2.1	Tomato	cytosol	27.7	20.13
Solyc09g008070.2.1	Tomato	cytosol, unclear	29.28	16.09
Solyc06g074980.2.1	Tomato	nucleus	29.05	16.02
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	28.6	15.78
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	28.6	15.72
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	29.05	15.52
Solyc01g068330.2.1	Tomato	nucleus	27.03	14.62
Solyc10g078320.1.1	Tomato	nucleus	29.05	13.07
Solyc06g008730.2.1	Tomato	cytosol	25.9	12.38
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	23.87	9.4

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.2	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597
GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	UniProt:K4CAL7	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF61	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc06g083620.2
EnsemblPlants:Solyc06g083620.2.1	TIGRFAMs:TIGR01242	UniParc:UPI000276B5DF	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:48968804..48972774

Molecular Weight (calculated)

49428.9 Da

IEP (calculated)

6.073

GRAVY (calculated)

-0.418

Length

444 amino acids

Sequence
(BLAST)

001: MGQGTPGGLN RQLPGDRKND GDKKEKKFEP AAPPARVGRK QRKQKGSEAA ARIPAVTPLT KCKLRLLKLE RIKDYLLMEE EFVANQERLK PQEEKTEEDR
101: SKVDDLRGSP MSVGNLEELI DENHAIVSSS VGPEYYVGIL SFVDKDQLEP GCAILMHNKV LSVVGLLQDD VDPMVSVMKV EKAPLESYAD IGGLDAQIQE
201: IKEAVELPLT HPELYEDIGI KPPKGVILYG EPGTGKTLLA KAVANSTSAT FLRVVGSELI QKYLGDGPKL VRELFRVADD LSPSIVFIDE IDAVGTKRYD
301: AHSGGEREIQ RTMLELLNQL DGFDSRGDVK VILATNKIES LDPALLRPGR IDRKIEFPLP DIKTRRRIFQ IHTARMTLAD DVNLEEFVMT KDEFSGADIK
401: AICTEAGLLA LRERRMKVTH ADFKKAKDKV MFKKKEGVPE GLYM

Best Arabidopsis Sequence Match ( AT4G29040.1 )
(BLAST)

001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM

Arabidopsis Description

RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.