Factsheet for Bra010342.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001152.1-P
Bra002279.1-P
Bra002662.1-P
Bra003428.1-P
Bra005560.1-P
Bra006369.1-P
Bra006529.1-P
Bra006530.1-P
Bra006775.1-P
Bra007565.1-P
Bra009693.1-P
Bra010366.1-P
Bra010849.1-P
Bra011030.1-P
Bra013157.1-P
Bra013838.1-P
Bra014468.1-P
Bra015170.1-P
Bra015799.1-P
Bra017345.1-P
Bra017408.1-P
Bra017890.1-P
Bra018084.1-P
Bra019524.1-P
Bra020079.1-P
Bra020378.1-P
Bra021810.1-P
Bra022899.1-P
Bra023815.1-P
Bra023851.1-P
Bra024200.1-P
Bra025066.1-P
Bra025167.1-P
Bra026492.1-P
Bra027456.1-P
Bra027705.1-P
Bra027934.1-P
Bra029375.1-P
Bra030921.1-P
Bra030922.1-P
Bra031328.1-P
Bra032291.1-P
Bra032422.1-P
Bra033773.1-P
Bra035332.1-P
Bra035381.1-P
Bra035416.1-P
Bra036488.1-P
Bra038162.1-P
Bra038919.1-P
Bra039431.1-P
Bra039688.1-P
Bra040214.1-P
Bra040569.1-P
Bra040831.1-P
Bra040915.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29040.1	Bra010849.1-P	AT1G29150.1	14623884
AT4G29040.1	Bra032291.1-P	AT1G29150.1	14623884
AT4G29040.1	Bra030922.1-P	AT1G53750.1	14623884
AT4G29040.1	Bra039688.1-P	AT1G53750.1	14623884
AT4G29040.1	Bra040569.1-P	AT1G53750.1	14623884
AT4G29040.1	Bra030921.1-P	AT1G53850.1	14623884
AT4G29040.1	Bra027934.1-P	AT1G56450.1	14623884
AT4G29040.1	Bra038162.1-P	AT1G56450.1	14623884
AT4G29040.1	Bra038919.1-P	AT1G56450.1	14623884
AT4G29040.1	Bra017890.1-P	AT1G59900.1	24846764
AT4G29040.1	Bra035416.1-P	AT1G59900.1	24846764
AT4G29040.1	Bra027705.1-P	AT1G64520.1	14623884
AT4G29040.1	Bra040915.1-P	AT1G64520.1	14623884
AT4G29040.1	Bra015799.1-P	AT1G75990.1	14623884
AT4G29040.1	Bra013157.1-P	AT2G05840.1	14623884
AT4G29040.1	Bra015170.1-P	AT2G05840.1	14623884
AT4G29040.1	Bra036488.1-P	AT2G20580.1	14623884
AT4G29040.1	Bra005560.1-P	AT2G32730.1	14623884
AT4G29040.1	Bra021810.1-P	AT2G32730.1	14623884
AT4G29040.1	Bra022899.1-P	AT2G32730.1	14623884
AT4G29040.1	Bra001152.1-P	AT3G05530.1	14623884
AT4G29040.1	Bra039431.1-P	AT3G05530.1	14623884
AT4G29040.1	Bra040214.1-P	AT3G05530.1	14623884
AT4G29040.1	Bra023851.1-P	AT3G22110.1	14623884
AT4G29040.1	Bra031328.1-P	AT3G22110.1	14623884
AT4G29040.1	Bra023815.1-P	AT3G22630.1	14623884
AT4G29040.1	Bra040831.1-P	AT3G22630.1	14623884
AT4G29040.1	Bra017345.1-P	AT3G25860.1	24846764
AT4G29040.1	Bra025167.1-P	AT3G25860.1	24846764
AT4G29040.1	Bra018084.1-P	AT3G48100.1	18642946
AT4G29040.1	Bra019524.1-P	AT3G48100.1	18642946
AT4G29040.1	Bra033773.1-P	AT3G48100.1	18642946
AT4G29040.1	Bra003428.1-P	AT3G60820.1	14623884
AT4G29040.1	Bra007565.1-P	AT3G60820.1	14623884
AT4G29040.1	Bra014468.1-P	AT3G60820.1	14623884
AT4G29040.1	Bra013838.1-P	AT4G24820.1	14623884
AT4G29040.1	Bra010366.1-P	AT4G28470.1	14623884
AT4G29040.1	Bra011030.1-P	AT4G28470.1	14623884
AT4G29040.1	Bra024200.1-P	AT4G28470.1	14623884
AT4G29040.1	Bra006369.1-P	AT5G05780.1	14623884
AT4G29040.1	Bra017408.1-P	AT5G05780.1	14623884
AT4G29040.1	Bra032422.1-P	AT5G05780.1	14623884
AT4G29040.1	Bra002279.1-P	AT5G19990.1	14623884
AT4G29040.1	Bra006529.1-P	AT5G19990.1	14623884
AT4G29040.1	Bra006530.1-P	AT5G19990.1	14623884
AT4G29040.1	Bra020079.1-P	AT5G19990.1	14623884
AT4G29040.1	Bra002279.1-P	AT5G20000.1	14623884
AT4G29040.1	Bra006529.1-P	AT5G20000.1	14623884
AT4G29040.1	Bra006530.1-P	AT5G20000.1	14623884
AT4G29040.1	Bra020079.1-P	AT5G20000.1	14623884
AT4G29040.1	Bra009693.1-P	AT5G23540.1	14623884
AT4G29040.1	Bra026492.1-P	AT5G23540.1	14623884
AT4G29040.1	Bra029375.1-P	AT5G23540.1	14623884
AT4G29040.1	Bra035381.1-P	AT5G35750.1	18642946
AT4G29040.1	Bra027456.1-P	AT5G42790.1	14623884
AT4G29040.1	Bra035332.1-P	AT5G42790.1	14623884
AT4G29040.1	Bra025066.1-P	AT5G45620.1	14623884
AT4G29040.1	Bra002662.1-P	AT5G58290.1	14623884
AT4G29040.1	Bra006775.1-P	AT5G58290.1	14623884
AT4G29040.1	Bra020378.1-P	AT5G58290.1	14623884

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14224	Canola	cytosol	100.0	100.0
CDX97472	Canola	cytosol	99.55	99.55
Bra011079.1-P	Field mustard	cytosol	98.65	99.1
AT4G29040.1	Thale cress	cytosol	98.43	98.87
AT2G20140.1	Thale cress	cytosol	97.98	98.42
KRH32292	Soybean	cytosol, nucleus	95.51	95.94
KRH19693	Soybean	cytosol	95.28	95.71
KRH67524	Soybean	nucleus	95.73	95.52
KRG95799	Soybean	cytosol, nucleus	95.51	95.29
VIT_07s0005g05160.t01	Wine grape	cytosol	95.28	95.28
PGSC0003DMT400040872	Potato	cytosol	94.38	94.59
Solyc06g083620.2.1	Tomato	nucleus, plastid	93.71	93.92
PGSC0003DMT400051744	Potato	cytosol	93.71	93.92
GSMUA_Achr4P05850_001	Banana	cytosol	88.09	92.45
GSMUA_Achr4P05840_001	Banana	cytosol	86.97	91.92
Os07t0691800-01	Rice	cytosol, nucleus, plasma membrane, plastid	92.13	91.52
EER99961	Sorghum	cytosol	91.91	91.5
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	91.69	91.28
TraesCS2B01G105700.1	Wheat	cytosol	91.91	91.09
TraesCS2D01G087900.1	Wheat	cytosol, golgi	91.91	91.09
TraesCS4D01G190600.1	Wheat	cytosol, golgi	91.91	90.89
HORVU4Hr1G055060.1	Barley	cytosol	91.91	90.89
Os03t0298400-01	Rice	plasma membrane	91.91	90.89
TraesCS2A01G090000.1	Wheat	cytosol	91.69	90.87
TraesCS4A01G115000.1	Wheat	cytosol	91.69	90.67
TraesCS4B01G189200.1	Wheat	cytosol	91.69	90.67
Zm00001d028801_P001	Maize	cytosol, extracellular	89.89	89.69
Zm00001d007215_P001	Maize	cytosol	91.69	87.93
HORVU2Hr1G014770.2	Barley	cytosol, plastid	85.39	86.17
Bra024165.1-P	Field mustard	cytosol	56.63	78.02
HORVU3Hr1G095530.3	Barley	mitochondrion, plastid	42.02	74.5
HORVU1Hr1G091080.1	Barley	mitochondrion, plastid	41.8	74.1
Bra005023.1-P	Field mustard	cytosol	28.76	53.56
Bra002662.1-P	Field mustard	cytosol	42.02	46.29
Bra020378.1-P	Field mustard	cytosol	42.02	46.29
Bra006775.1-P	Field mustard	cytosol	40.0	45.52
Bra001152.1-P	Field mustard	cytosol	39.78	41.75
Bra040214.1-P	Field mustard	cytosol	39.78	41.75
Bra039431.1-P	Field mustard	cytosol	39.78	41.75
Bra035338.1-P	Field mustard	cytosol	37.3	41.6
Bra033655.1-P	Field mustard	cytosol	37.08	41.35
Bra006529.1-P	Field mustard	cytosol	38.88	41.29
Bra002279.1-P	Field mustard	cytosol	38.2	40.57
Bra030922.1-P	Field mustard	cytosol	37.08	38.73
Bra039688.1-P	Field mustard	cytosol	36.85	38.5
Bra040569.1-P	Field mustard	cytosol	36.85	37.88
Bra008198.1-P	Field mustard	cytosol	35.73	25.32
Bra020079.1-P	Field mustard	cytosol	38.88	23.99
Bra017378.1-P	Field mustard	cytosol	25.84	19.07
Bra029795.1-P	Field mustard	cytosol	28.76	15.82
Bra003123.1-P	Field mustard	cytosol	28.76	15.8
Bra001297.1-P	Field mustard	cytosol	28.54	15.7
Bra034089.1-P	Field mustard	cytosol	28.54	15.68
Bra006978.1-P	Field mustard	cytosol	28.31	15.54
Bra022833.1-P	Field mustard	cytosol	25.62	15.34
Bra000999.1-P	Field mustard	cytosol, mitochondrion	25.17	13.45
Bra007262.1-P	Field mustard	plastid	27.19	12.35
Bra005733.1-P	Field mustard	cytosol	28.54	11.5
Bra009342.1-P	Field mustard	cytosol	25.62	10.17
Bra032565.1-P	Field mustard	mitochondrion	28.99	6.92
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.2	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra010342	EnsemblPlants:Bra010342.1	EnsemblPlants:Bra010342.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	UniProt:M4D1J2	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23073	PANTHER:PTHR23073:SF61	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI00025472B8
SEG:seg	:	:	:	:	:

Description

AT4G29040 (E=3e-224) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase

Coordinates

chrA08:-:13970143..13972688

Molecular Weight (calculated)

49543.9 Da

IEP (calculated)

5.894

GRAVY (calculated)

-0.474

Length

445 amino acids

Sequence
(BLAST)

001: MGQGPSGGLN RQGGDRKPDG GGDKKEKKFE PAAPPSRVGR KQRKQRGPEA AARLPTVTPS TKCKLRLLKM ERIKDYLLME EEFVANQERL KPQEEKAEED
101: RSKVDDLRGT PMSVGNLEEL IDENHAIVSS SVGPEYYVGI MSFVDKDQLE PGCSILMHNK VLSVVGILQD EVDPMVSVMK VEKAPLESYA DIGGLEAQIQ
201: EIKEAVELPL THPELYEDIG IKPPKGVILY GEPGTGKTLL AKAVANSTSA TFLRVVGSEL IQKYLGDGPK LVRELFRVAD DLSPSIVFID EIDAVGTKRY
301: DANSGGEREI QRTMLELLNQ LDGFDSRGDV KVILATNRIE SLDPALLRPG RIDRKIEFPL PDIKTRRRIF QIHTSKMTLS EDVNLEEFVM TKDEFSGADI
401: KAICTEAGLL ALRERRMKVT HPDFKKAKEK VMFKKKEGVP EGLYM

Best Arabidopsis Sequence Match ( AT4G29040.1 )
(BLAST)

001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM

Arabidopsis Description

RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.