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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 6
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400004851
PGSC0003DMT400007520
PGSC0003DMT400009060
PGSC0003DMT400009588
PGSC0003DMT400012446
PGSC0003DMT400015729
PGSC0003DMT400015775
PGSC0003DMT400020708
PGSC0003DMT400020843
PGSC0003DMT400023656
PGSC0003DMT400024306
PGSC0003DMT400024982
PGSC0003DMT400031956
PGSC0003DMT400033754
PGSC0003DMT400038718
PGSC0003DMT400039976
PGSC0003DMT400040763
PGSC0003DMT400042160
PGSC0003DMT400049388
PGSC0003DMT400050736
PGSC0003DMT400053010
PGSC0003DMT400054523
PGSC0003DMT400058139
PGSC0003DMT400058223
PGSC0003DMT400060796
PGSC0003DMT400062212
PGSC0003DMT400062813
PGSC0003DMT400063187
PGSC0003DMT400063574
PGSC0003DMT400069954
PGSC0003DMT400072856
PGSC0003DMT400076219
PGSC0003DMT400078301
PGSC0003DMT400082075

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G29040.1 PGSC0003DMT400040763 AT1G04810.1 14623884
AT4G29040.1 PGSC0003DMT400076219 AT1G04810.1 14623884
AT4G29040.1 PGSC0003DMT400015775 AT1G20200.1 14623884
AT4G29040.1 PGSC0003DMT400072856 AT1G29150.1 14623884
AT4G29040.1 PGSC0003DMT400012446 AT1G53750.1 14623884
AT4G29040.1 PGSC0003DMT400023656 AT1G53750.1 14623884
AT4G29040.1 PGSC0003DMT400024982 AT1G53850.1 14623884
AT4G29040.1 PGSC0003DMT400054523 AT1G53850.1 14623884
AT4G29040.1 PGSC0003DMT400020843 AT1G56450.1 14623884
AT4G29040.1 PGSC0003DMT400004851 AT1G59900.1 24846764
AT4G29040.1 PGSC0003DMT400058223 AT1G59900.1 24846764
AT4G29040.1 PGSC0003DMT400031956 AT1G64520.1 14623884
AT4G29040.1 PGSC0003DMT400015775 AT1G75990.1 14623884
AT4G29040.1 PGSC0003DMT400007520 AT2G05840.1 14623884
AT4G29040.1 PGSC0003DMT400024306 AT2G20580.1 14623884
AT4G29040.1 PGSC0003DMT400040763 AT2G32730.1 14623884
AT4G29040.1 PGSC0003DMT400076219 AT2G32730.1 14623884
AT4G29040.1 PGSC0003DMT400063574 AT3G05530.1 14623884
AT4G29040.1 PGSC0003DMT400024982 AT3G14290.1 14623884
AT4G29040.1 PGSC0003DMT400054523 AT3G14290.1 14623884
AT4G29040.1 PGSC0003DMT400049388 AT3G22110.1 14623884
AT4G29040.1 PGSC0003DMT400082075 AT3G22630.1 14623884
AT4G29040.1 PGSC0003DMT400033754 AT3G25860.1 24846764
AT4G29040.1 PGSC0003DMT400063187 AT3G48100.1 18642946
AT4G29040.1 PGSC0003DMT400009060 AT3G60820.1 14623884
AT4G29040.1 PGSC0003DMT400058139 AT3G60820.1 14623884
AT4G29040.1 PGSC0003DMT400062212 AT4G24820.1 14623884
AT4G29040.1 PGSC0003DMT400024306 AT4G28470.1 14623884
AT4G29040.1 PGSC0003DMT400042160 AT5G05780.1 14623884
AT4G29040.1 PGSC0003DMT400038718 AT5G19990.1 14623884
AT4G29040.1 PGSC0003DMT400038718 AT5G20000.1 14623884
AT4G29040.1 PGSC0003DMT400020708 AT5G23540.1 14623884
AT4G29040.1 PGSC0003DMT400007520 AT5G35590.1 14623884
AT4G29040.1 PGSC0003DMT400015729 AT5G35750.1 18642946
AT4G29040.1 PGSC0003DMT400009588 AT5G42790.1 14623884
AT4G29040.1 PGSC0003DMT400039976 AT5G42790.1 14623884
AT4G29040.1 PGSC0003DMT400062813 AT5G45620.1 14623884
AT4G29040.1 PGSC0003DMT400069954 AT5G45620.1 14623884
AT4G29040.1 PGSC0003DMT400053010 AT5G58290.1 14623884
AT4G29040.1 PGSC0003DMT400078301 AT5G58290.1 14623884
AT4G29040.1 PGSC0003DMT400050736 AT5G64760.1 14623884
AT4G29040.1 PGSC0003DMT400060796 AT5G64760.1 14623884
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400051744 Potato cytosol 98.42 98.42
KRH67524 Soybean nucleus 98.2 97.76
KRH32292 Soybean cytosol, nucleus 97.52 97.74
KRG95799 Soybean cytosol, nucleus 97.97 97.53
KRH19693 Soybean cytosol 97.3 97.52
VIT_07s0005g05160.t01 Wine grape cytosol 97.52 97.3
AT4G29040.1 Thale cress cytosol 95.72 95.94
AT2G20140.1 Thale cress cytosol 95.05 95.26
CDY35245 Canola cytosol 94.59 94.81
Bra011079.1-P Field mustard cytosol 94.59 94.81
CDX92914 Canola cytosol, extracellular 94.59 94.81
CDY06847 Canola cytosol 94.37 94.58
CDY14224 Canola cytosol 94.59 94.38
Bra010342.1-P Field mustard cytosol 94.59 94.38
CDX97472 Canola cytosol 94.59 94.38
GSMUA_Achr4P05850_001 Banana cytosol 89.86 94.1
GSMUA_Achr4P05840_001 Banana cytosol 88.51 93.35
Os03t0298400-01 Rice plasma membrane 92.57 91.33
TraesCS2B01G105700.1 Wheat cytosol 92.12 91.09
TraesCS2D01G087900.1 Wheat cytosol, golgi 92.12 91.09
Os07t0691800-01 Rice cytosol, nucleus, plasma membrane, plastid 91.89 91.07
EER99961 Sorghum cytosol 91.67 91.05
TraesCS2A01G090000.1 Wheat cytosol 91.89 90.87
HORVU4Hr1G055060.1 Barley cytosol 91.67 90.44
TraesCS4D01G190600.1 Wheat cytosol, golgi 91.67 90.44
Zm00001d022573_P001 Maize cytosol, extracellular, plasma membrane 90.99 90.38
Zm00001d028801_P001 Maize cytosol, extracellular 90.77 90.36
TraesCS4A01G115000.1 Wheat cytosol 91.44 90.22
TraesCS4B01G189200.1 Wheat cytosol 91.44 90.22
Zm00001d007215_P001 Maize cytosol 90.99 87.07
HORVU2Hr1G014770.2 Barley cytosol, plastid 86.04 86.62
CDY59958 Canola cytosol 61.71 75.27
HORVU3Hr1G095530.3 Barley mitochondrion, plastid 42.34 74.9
Bra024165.1-P Field mustard cytosol 54.28 74.61
HORVU1Hr1G091080.1 Barley mitochondrion, plastid 42.12 74.5
PGSC0003DMT400006190 Potato cytosol 38.74 52.76
PGSC0003DMT400053010 Potato cytosol 42.12 45.28
PGSC0003DMT400078301 Potato cytosol 42.12 45.17
PGSC0003DMT400079514 Potato cytosol 37.84 42.21
PGSC0003DMT400063574 Potato cytosol 38.96 40.9
PGSC0003DMT400012446 Potato cytosol 36.94 38.23
PGSC0003DMT400023656 Potato cytosol 36.71 38.08
PGSC0003DMT400038718 Potato cytosol 33.78 34.64
PGSC0003DMT400018483 Potato cytosol 25.0 27.07
PGSC0003DMT400072919 Potato cytosol 27.7 20.13
PGSC0003DMT400031321 Potato cytosol 29.05 16.02
PGSC0003DMT400055513 Potato cytosol 29.05 15.99
PGSC0003DMT400050662 Potato cytosol 28.83 15.9
PGSC0003DMT400027096 Potato cytosol 28.83 15.84
PGSC0003DMT400046624 Potato cytosol 28.83 15.8
PGSC0003DMT400015455 Potato mitochondrion 26.35 15.33
PGSC0003DMT400046254 Potato cytosol 27.25 14.72
PGSC0003DMT400013679 Potato cytosol 26.13 12.47
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.2Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300InterPro:AAA+_ATPase
ProteinID:ABB02638ProteinID:ABB02638.1InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreEMBL:DQ222507GO:GO:0000166
GO:GO:0000502GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0016787GO:GO:0019538GO:GO:0030163UniProt:M1BAK6InterPro:P-loop_NTPasePFAM:PF00004
EnsemblPlantsGene:PGSC0003DMG400015804PGSC:PGSC0003DMG400015804EnsemblPlants:PGSC0003DMT400040872ScanProsite:PS00674PANTHER:PTHR23073PANTHER:PTHR23073:SF61
SMART:SM00382SUPFAM:SSF52540TIGRFAMs:TIGR01242UniParc:UPI0002949E01SEG:seg:
Description
26S proteasome subunit 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400015804]
Coordinates
chr9:-:45371785..45378871
Molecular Weight (calculated)
49497.0 Da
IEP (calculated)
6.073
GRAVY (calculated)
-0.421
Length
444 amino acids
Sequence
(BLAST)
001: MGQGTPGGLN RQLPGDRKND GDKKEKKFEP AAPPARVGRK QRKQKGPEAA ARLPTVTPLT KCKLRLLKLE RIKDYLLMEE EFVANQERLK PQEEKTEEDR
101: SKVDDLRGSP MSVGNLEELI DENHAIVSSS VGPEYYVGIL SFVDKDQLEP GCAILMHNKV LSVVGLLQDD VDPMVSVMKV EKAPLESYAD IGGLDAQIQE
201: IKEAVELPLT HPELYEDIGI KPPKGVILYG EPGTGKTLLA KAVANSTSAT FLRVVGSELI QKYLGDGPKL VRELFRVADD LSPSIVFIDE IDAVGTKRYD
301: AHSGGEREIQ RTMLELLNQL DGFDSRGDVK VILATNKIES LDPALLRPGR IDRKIEFPLP DIKTRRRIFQ IHTARMTLSD DVNLEEFVMT KDEFSGADIK
401: AICTEAGLLA LRERRMKVIH ADFKKAKDKV MFKKKEGVPE GLYM
Best Arabidopsis Sequence Match ( AT4G29040.1 )
(BLAST)
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.