Factsheet for PGSC0003DMT400020708

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079200.2.1	Tomato	nucleus	98.72	98.72
VIT_18s0001g10820.t01	Wine grape	cytosol	96.47	97.41
KRH21194	Soybean	cytosol, nucleus	96.15	97.09
KRH05705	Soybean	cytosol, nucleus	96.79	96.79
KRH11080	Soybean	cytosol	95.83	96.76
CDY59032	Canola	cytosol	72.44	96.17
CDY40791	Canola	cytosol	93.59	94.81
Bra029375.1-P	Field mustard	cytosol	75.64	94.78
KRH15339	Soybean	nucleus	95.83	94.62
Bra009693.1-P	Field mustard	cytosol	92.63	93.83
CDX80372	Canola	extracellular	92.63	93.83
Bra026492.1-P	Field mustard	cytosol	92.63	93.83
AT5G23540.1	Thale cress	cytosol	92.63	93.83
CDY46961	Canola	cytosol	92.63	93.83
CDY16857	Canola	cytosol	92.63	93.83
CDX88035	Canola	cytosol	92.63	93.83
CDX87167	Canola	cytosol	92.63	93.83
TraesCS7A01G416000.1	Wheat	cytosol	65.06	65.7
Os06t0703600-01	Rice	cytosol	64.74	65.58
TraesCS7B01G316000.1	Wheat	cytosol	63.78	64.4
TraesCS7D01G409200.1	Wheat	cytosol	63.78	64.4
HORVU7Hr1G096410.6	Barley	cytosol, plastid	56.41	52.85
PGSC0003DMT400023896	Potato	cytosol	28.85	24.52
PGSC0003DMT400069203	Potato	cytosol	28.53	24.25

Protein Annotations

EntrezGene:102605209	MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0061578	GO:GO:0070536	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M1AE01
InterPro:MPN	PFAM:PF01398	PFAM:PF13012	EnsemblPlantsGene:PGSC0003DMG400008026	PGSC:PGSC0003DMG400008026	EnsemblPlants:PGSC0003DMT400020708
PFscan:PS50249	InterPro:PSMD14	PANTHER:PTHR10410	PANTHER:PTHR10410:SF13	InterPro:Rpn11/EIF3F_C	SMART:SM00232
SUPFAM:SSF102712	UniParc:UPI0002949977	RefSeq:XP_006354906.1	SEG:seg	:	:

Description

26S proteasome non-ATPase regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400008026]

Coordinates

chr4:-:68488201..68492649

Molecular Weight (calculated)

34724.0 Da

IEP (calculated)

6.803

GRAVY (calculated)

-0.229

Length

312 amino acids

Sequence
(BLAST)

001: MSGMERLQRM FAGAGGALGH PPPDSPTLDS SEQVYISSLA LLKMLKHGRA GVPMEVMGLM LGDFVDEYTV RVVDVFAMPQ SGTGVSVEAV DHVFQTNMLD
101: MLKQTGRPEM VVGWYHSHPG FGCWLSGVDI NTQQSFEALN QRAVAVVVDP IQSVKGKVVI DAFRLINPQT MMLGQEPRQT TSNLGHLNKP SIQALIHGLN
201: RHYYSIAINY RKNELEEKML LNLHKKKWTD GLALQRFDAH SKTNEQTVQE MLNLAVKYNK AVQQEDELSP EKLAIANVGR QDAKKHLEEH VSNLMSSNIV
301: QTLGTMLDTV VF

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.