CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05705	Soybean	cytosol, nucleus	97.78	99.04
KRH21194	Soybean	cytosol, nucleus	95.57	97.73
KRH11080	Soybean	cytosol	95.57	97.73
VIT_18s0001g10820.t01	Wine grape	cytosol	95.25	97.41
PGSC0003DMT400020708	Potato	cytosol	94.62	95.83
CDY59032	Canola	cytosol	71.2	95.74
Solyc04g079200.2.1	Tomato	nucleus	94.3	95.51
CDY40791	Canola	cytosol	92.09	94.48
Bra029375.1-P	Field mustard	cytosol	74.37	94.38
Bra009693.1-P	Field mustard	cytosol	91.46	93.83
AT5G23540.1	Thale cress	cytosol	91.46	93.83
CDX80372	Canola	extracellular	91.46	93.83
Bra026492.1-P	Field mustard	cytosol	91.46	93.83
CDY16857	Canola	cytosol	91.46	93.83
CDX88035	Canola	cytosol	91.46	93.83
CDX87167	Canola	cytosol	91.46	93.83
CDY46961	Canola	cytosol	91.14	93.51
TraesCS7A01G416000.1	Wheat	cytosol	64.24	65.7
Os06t0703600-01	Rice	cytosol	63.92	65.58
TraesCS7B01G316000.1	Wheat	cytosol	62.97	64.4
TraesCS7D01G409200.1	Wheat	cytosol	62.97	64.4
HORVU7Hr1G096410.6	Barley	cytosol, plastid	55.7	52.85
KRH61926	Soybean	nucleus	28.16	23.8
KRH52586	Soybean	cytosol, nucleus	28.16	21.76

Protein Annotations

EntrezGene:100778174	EntrezGene:100817264	MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	EMBL:ACUP02008578	EnsemblPlantsGene:GLYMA_14G081600
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0061578	GO:GO:0070536
UniProt:I1M8K6	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	EnsemblPlants:KRH15339	ProteinID:KRH15339	ProteinID:KRH15339.1
InterPro:MPN	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	InterPro:PSMD14	PANTHER:PTHR10410
PANTHER:PTHR10410:SF13	InterPro:Rpn11/EIF3F_C	SMART:SM00232	SUPFAM:SSF102712	UniParc:UPI00023D401C	SEG:seg

Description

hypothetical protein

Coordinates

chr14:+:7064342..7068643

Molecular Weight (calculated)

35258.6 Da

IEP (calculated)

6.576

GRAVY (calculated)

-0.279

Length

316 amino acids

Sequence
(BLAST)

001: MSGMERLQRM FAGAGGALGH PPPDSPTLDS SEQVYISSLA LLKMLKHGRA GVPMEVMGLM LGEFVDEYTV RVVDVFAMPQ SGTGVSVEAV DHVFQTNMLD
101: MLKQTGRPEM VVGWYHSHPG FGCWLSGVDI NTQQSFEALN QRAVAVVVDP IQSVKGKVVI DAFRLINPQT MMLGQEPRQT TSNLGHLNKP SIQALIHGLN
201: RHYYSIAINY RKNELEEKML LNLHKKKWTD GLTLRHFDSH SKTNEQTVQE MLSLAAKYNK AVQEEDELPP EKLAIANVGR QDAKKHLEEH VSNLMSSNIV
301: QTLGMMLDTE QSYITC

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.