CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11080	Soybean	cytosol	99.03	99.03
VIT_18s0001g10820.t01	Wine grape	cytosol	98.06	98.06
KRH05705	Soybean	cytosol, nucleus	98.71	97.76
CDY59032	Canola	cytosol	73.14	96.17
PGSC0003DMT400020708	Potato	cytosol	97.09	96.15
Bra029375.1-P	Field mustard	cytosol	77.02	95.58
KRH15339	Soybean	nucleus	97.73	95.57
CDY40791	Canola	cytosol	95.15	95.45
Solyc04g079200.2.1	Tomato	nucleus	96.12	95.19
CDY46961	Canola	cytosol	94.17	94.48
Bra026492.1-P	Field mustard	cytosol	93.85	94.16
Bra009693.1-P	Field mustard	cytosol	93.85	94.16
AT5G23540.1	Thale cress	cytosol	93.85	94.16
CDY16857	Canola	cytosol	93.85	94.16
CDX88035	Canola	cytosol	93.85	94.16
CDX87167	Canola	cytosol	93.85	94.16
CDX80372	Canola	extracellular	93.85	94.16
TraesCS7A01G416000.1	Wheat	cytosol	66.34	66.34
Os06t0703600-01	Rice	cytosol	66.02	66.23
TraesCS7B01G316000.1	Wheat	cytosol	65.05	65.05
TraesCS7D01G409200.1	Wheat	cytosol	65.05	65.05
HORVU7Hr1G096410.6	Barley	cytosol, plastid	57.93	53.75
KRH61926	Soybean	nucleus	29.13	24.06
KRH52586	Soybean	cytosol, nucleus	29.13	22.0

Protein Annotations

EntrezGene:100813116	MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	EMBL:ACUP02008344	EnsemblPlantsGene:GLYMA_13G224700	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0061578	GO:GO:0070536	UniProt:I1M1N6
InterPro:IPR037518	InterPro:JAMM/MPN+_dom	EnsemblPlants:KRH21194	ProteinID:KRH21194	ProteinID:KRH21194.1	InterPro:MPN
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	InterPro:PSMD14	PANTHER:PTHR10410	PANTHER:PTHR10410:SF13
InterPro:Rpn11/EIF3F_C	SMART:SM00232	SUPFAM:SSF102712	UniParc:UPI0001FC890D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:33745884..33748569

Molecular Weight (calculated)

34586.9 Da

IEP (calculated)

6.710

GRAVY (calculated)

-0.242

Length

309 amino acids

Sequence
(BLAST)

001: MERLQRMFAG AGGALGHPPP DSPTLDSSEQ VYISSLALLK MLKHGRAGVP MEVMGLMLGE FVDEYTVRVV DVFAMPQSGT GVSVEAVDHV FQTNMLDMLK
101: QTGRPEMVVG WYHSHPGFGC WLSGVDINTQ QSFEALNQRA VAVVVDPIQS VKGKVVIDAF RLINPQTMML GQEPRQTTSN LGHLNKPSIQ ALIHGLNRHY
201: YSIAINYRKN ELEEKMLLNL HKKKWTDGLT LRHFDTHSKT NEQTVQEMLN LAVKYNKAVQ EEDELPPEKL AIANVGRQDA KKHLEEHISN LMSSNIVQTL
301: GMMLDTVVF

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.