CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21194	Soybean	cytosol, nucleus	97.76	98.71
KRH11080	Soybean	cytosol	97.76	98.71
VIT_18s0001g10820.t01	Wine grape	cytosol	97.44	98.38
KRH15339	Soybean	nucleus	99.04	97.78
CDY59032	Canola	cytosol	73.08	97.02
PGSC0003DMT400020708	Potato	cytosol	96.79	96.79
Solyc04g079200.2.1	Tomato	nucleus	96.15	96.15
Bra029375.1-P	Field mustard	cytosol	76.28	95.58
CDY40791	Canola	cytosol	94.23	95.45
AT5G23540.1	Thale cress	cytosol	93.59	94.81
Bra009693.1-P	Field mustard	cytosol	93.59	94.81
Bra026492.1-P	Field mustard	cytosol	93.59	94.81
CDY16857	Canola	cytosol	93.59	94.81
CDX88035	Canola	cytosol	93.59	94.81
CDX87167	Canola	cytosol	93.59	94.81
CDX80372	Canola	extracellular	93.59	94.81
CDY46961	Canola	cytosol	93.27	94.48
TraesCS7A01G416000.1	Wheat	cytosol	65.38	66.02
Os06t0703600-01	Rice	cytosol	65.06	65.91
TraesCS7B01G316000.1	Wheat	cytosol	64.1	64.72
TraesCS7D01G409200.1	Wheat	cytosol	64.1	64.72
HORVU7Hr1G096410.6	Barley	cytosol, plastid	57.05	53.45
KRH61926	Soybean	nucleus	28.85	24.06
KRH52586	Soybean	cytosol, nucleus	28.85	22.0

Protein Annotations

EntrezGene:100778174	EntrezGene:100817264	MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	EMBL:ACUP02008578	EMBL:ACUP02010773
EnsemblPlantsGene:GLYMA_17G243800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0061578
GO:GO:0070536	UniProt:I1M8K7	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	EnsemblPlants:KRH05705	ProteinID:KRH05705
ProteinID:KRH05705.1	ProteinID:KRH15340.1	InterPro:MPN	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249
InterPro:PSMD14	PANTHER:PTHR10410	PANTHER:PTHR10410:SF13	InterPro:Rpn11/EIF3F_C	SMART:SM00232	SUPFAM:SSF102712
UniParc:UPI000233B6D5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:39937926..39942263

Molecular Weight (calculated)

34779.1 Da

IEP (calculated)

6.710

GRAVY (calculated)

-0.238

Length

312 amino acids

Sequence
(BLAST)

001: MSGMERLQRM FAGAGGALGH PPPDSPTLDS SEQVYISSLA LLKMLKHGRA GVPMEVMGLM LGEFVDEYTV RVVDVFAMPQ SGTGVSVEAV DHVFQTNMLD
101: MLKQTGRPEM VVGWYHSHPG FGCWLSGVDI NTQQSFEALN QRAVAVVVDP IQSVKGKVVI DAFRLINPQT MMLGQEPRQT TSNLGHLNKP SIQALIHGLN
201: RHYYSIAINY RKNELEEKML LNLHKKKWTD GLTLRHFDSH SKTNEQTVQE MLSLAAKYNK AVQEEDELPP EKLAIANVGR QDAKKHLEEH VSNLMSSNIV
301: QTLGMMLDTV VF

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.