Factsheet for Bra029375.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46961	Canola	cytosol	98.39	79.55
Bra009693.1-P	Field mustard	cytosol	97.59	78.9
AT5G23540.1	Thale cress	cytosol	97.59	78.9
Bra026492.1-P	Field mustard	cytosol	97.59	78.9
VIT_18s0001g10820.t01	Wine grape	cytosol	95.58	77.02
KRH21194	Soybean	cytosol, nucleus	95.58	77.02
KRH11080	Soybean	cytosol	95.58	77.02
KRH05705	Soybean	cytosol, nucleus	95.58	76.28
PGSC0003DMT400020708	Potato	cytosol	94.78	75.64
Solyc04g079200.2.1	Tomato	nucleus	93.57	74.68
KRH15339	Soybean	nucleus	94.38	74.37
Os06t0703600-01	Rice	cytosol	65.46	52.92
TraesCS7A01G416000.1	Wheat	cytosol	63.45	51.13
TraesCS7B01G316000.1	Wheat	cytosol	62.25	50.16
TraesCS7D01G409200.1	Wheat	cytosol	62.25	50.16
HORVU7Hr1G096410.6	Barley	cytosol, plastid	55.82	41.74
Bra012351.1-P	Field mustard	cytosol	31.33	21.91
Bra024548.1-P	Field mustard	cytosol	30.12	21.07

Protein Annotations

MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	EnsemblPlantsGene:Bra029375	EnsemblPlants:Bra029375.1	EnsemblPlants:Bra029375.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0061578	GO:GO:0070536	InterPro:IPR037518
InterPro:JAMM/MPN+_dom	UniProt:M4EKQ8	InterPro:MPN	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249
InterPro:PSMD14	PANTHER:PTHR10410	PANTHER:PTHR10410:SF13	InterPro:Rpn11/EIF3F_C	SMART:SM00232	SUPFAM:SSF102712
UniParc:UPI0002545605	SEG:seg	:	:	:	:

Description

AT5G23540 (E=8e-073) | 26S proteasome regulatory subunit, putative

Coordinates

chrA02:-:25554311..25560447

Molecular Weight (calculated)

27898.6 Da

IEP (calculated)

6.283

GRAVY (calculated)

-0.262

Length

249 amino acids

Sequence
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ ALIHGLNRHY YSIAINYRKN ELEEKMLLNL HKKKWTDGLT LRPFDTHSKT NEQTVQEMLN LAAKYNKAVQ
201: EEDELSPEKL AIVNVGRQDA KKHLEEHVSN LMSSNIVQTL GTMLDTVVF

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.