Factsheet for VIT_18s0001g10820.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11080	Soybean	cytosol	98.38	98.38
KRH21194	Soybean	cytosol, nucleus	98.06	98.06
CDY59032	Canola	cytosol	74.11	97.45
KRH05705	Soybean	cytosol, nucleus	98.38	97.44
PGSC0003DMT400020708	Potato	cytosol	97.41	96.47
Solyc04g079200.2.1	Tomato	nucleus	96.76	95.83
Bra029375.1-P	Field mustard	cytosol	77.02	95.58
CDY40791	Canola	cytosol	95.15	95.45
KRH15339	Soybean	nucleus	97.41	95.25
Bra009693.1-P	Field mustard	cytosol	94.82	95.13
CDY16857	Canola	cytosol	94.82	95.13
CDX88035	Canola	cytosol	94.82	95.13
CDX87167	Canola	cytosol	94.82	95.13
CDX80372	Canola	extracellular	94.82	95.13
Bra026492.1-P	Field mustard	cytosol	94.82	95.13
AT5G23540.1	Thale cress	cytosol	94.82	95.13
CDY46961	Canola	cytosol	94.17	94.48
TraesCS7A01G416000.1	Wheat	cytosol	66.02	66.02
Os06t0703600-01	Rice	cytosol	65.37	65.58
TraesCS7B01G316000.1	Wheat	cytosol	64.72	64.72
TraesCS7D01G409200.1	Wheat	cytosol	64.72	64.72
HORVU7Hr1G096410.6	Barley	cytosol, plastid	57.28	53.15
VIT_03s0038g04360.t01	Wine grape	cytosol	29.13	25.0
VIT_16s0100g00150.t01	Wine grape	cytosol, extracellular, plastid	5.18	23.88

Protein Annotations

EntrezGene:100247098	wikigene:100247098	MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	UniProt:A5C6V1	EMBL:AM484392
ProteinID:CAN68719	ProteinID:CAN68719.1	ProteinID:CCB45860	ProteinID:CCB45860.1	EMBL:FN595227	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0061578	GO:GO:0070536	InterPro:IPR037518
InterPro:JAMM/MPN+_dom	EntrezGene:LOC100247098	wikigene:LOC100247098	MEROPS:M67.001	InterPro:MPN	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	InterPro:PSMD14	PANTHER:PTHR10410	PANTHER:PTHR10410:SF13	InterPro:Rpn11/EIF3F_C
SMART:SM00232	SUPFAM:SSF102712	TIGR:TC55187	UniParc:UPI0001522575	ArrayExpress:VIT_18s0001g10820	EnsemblPlantsGene:VIT_18s0001g10820
EnsemblPlants:VIT_18s0001g10820.t01	unigene:Vvi.5065	RefSeq:XP_002284566	RefSeq:XP_002284566.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:9085975..9091140

Molecular Weight (calculated)

34520.8 Da

IEP (calculated)

6.804

GRAVY (calculated)

-0.244

Length

309 amino acids

Sequence
(BLAST)

001: MERLQRMFAG AGGALGHPPP DSPTLDSSEQ VYISSLALLK MLKHGRAGVP MEVMGLMLGE FVDEYTVRVV DVFAMPQSGT GVSVEAVDHV FQTNMLDMLK
101: QTGRPEMVVG WYHSHPGFGC WLSGVDINTQ QSFEALNQRA VAVVVDPIQS VKGKVVIDAF RLINPQTMML GQEPRQTTSN LGHLNKPSIQ ALIHGLNRHY
201: YSIAINYRKN ELEEKMLLNL HKKKWTDGLT LKRFDTHSKT NEQTVQEMLS LAIKYNKAVQ EEDELPPEKL AIANVGRQDA KKHLEEHVSN LMSSNIVQTL
301: GTMLDTVVF

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.