Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
- plastid 1
- nucleus 1
- peroxisome 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g053650.2.1 | Tomato | nucleus | 91.63 | 99.88 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 87.72 | 88.31 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 84.6 | 85.65 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 84.26 | 85.31 |
| AT2G20580.1 | Thale cress | cytosol | 82.81 | 83.28 |
| Bra024200.1-P | Field mustard | cytosol | 82.48 | 82.94 |
| CDY29907 | Canola | extracellular | 82.37 | 82.83 |
| Bra011030.1-P | Field mustard | cytosol | 82.25 | 82.72 |
| CDX92875 | Canola | extracellular | 82.14 | 82.6 |
| CDY38389 | Canola | cytosol, extracellular | 82.14 | 82.51 |
| CDY35187 | Canola | cytosol, extracellular | 82.14 | 82.51 |
| CDY05774 | Canola | cytosol | 81.36 | 81.36 |
| AT4G28470.1 | Thale cress | cytosol | 80.36 | 80.81 |
| CDY31952 | Canola | plasma membrane | 75.78 | 79.32 |
| GSMUA_Achr11P... | Banana | cytosol | 77.9 | 78.6 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 72.77 | 78.27 |
| Os02t0146700-02 | Rice | plasma membrane | 78.24 | 78.06 |
| TraesCS6D01G105500.1 | Wheat | golgi | 77.23 | 77.32 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 77.23 | 77.32 |
| EES04513 | Sorghum | cytosol | 76.9 | 77.07 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 76.67 | 77.02 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 77.12 | 76.95 |
| Zm00001d015259_P001 | Maize | cytosol | 76.0 | 76.52 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 77.12 | 76.44 |
| Os09t0326800-01 | Rice | plasma membrane | 74.33 | 74.75 |
| Bra010366.1-P | Field mustard | cytosol | 73.88 | 74.72 |
| CDX97442 | Canola | cytosol | 73.55 | 74.63 |
| PGSC0003DMT400056260 | Potato | cytosol | 14.96 | 74.44 |
| Os06t0699900-01 | Rice | plasma membrane | 74.78 | 74.36 |
| CDY14239 | Canola | cytosol, extracellular | 73.66 | 74.32 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 21.76 | 66.78 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 55.58 | 60.95 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 59.82 | 60.91 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 58.93 | 60.9 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 56.47 | 60.89 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 59.26 | 60.34 |
| TraesCS7D01G413800.1 | Wheat | cytosol | 38.95 | 56.29 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 30.58 | 46.76 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 2.79 | 17.24 |
| PGSC0003DMT400040763 | Potato | cytosol | 16.85 | 15.21 |
| PGSC0003DMT400076219 | Potato | endoplasmic reticulum | 16.74 | 14.94 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:102586490 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | InterPro:ARM-like | InterPro:ARM-type_fold |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 | GO:GO:0009056 | GO:GO:0019538 | GO:GO:0030163 |
| GO:GO:0030234 | GO:GO:0042176 | GO:GO:0050790 | InterPro:IPR011989 | UniProt:M1AJV5 | PFAM:PF01851 |
| EnsemblPlantsGene:PGSC0003DMG402009395 | PGSC:PGSC0003DMG402009395 | EnsemblPlants:PGSC0003DMT400024306 | PIRSF:PIRSF015965 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 |
| InterPro:Proteasome/cyclosome_rpt | SUPFAM:SSF48371 | UniParc:UPI00029600DF | RefSeq:XP_006348825.1 | SEG:seg | : |
Description
26S proteasome regulatory subunit rpn1 [Source:PGSC_GENE;Acc:PGSC0003DMG402009395]
Coordinates
chr7:-:49663939..49675525
Molecular Weight (calculated)
98404.3 Da
IEP (calculated)
4.861
GRAVY (calculated)
-0.108
Length
896 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKTPDPNGT DASGSKSTKE EATIKVPSKD PKKKDDKKDE DLSEEDLALK QQLELYVERA QDADPGLQKV ALESMRQEIR TSTSSMTSVP KPLKFLRPHY
101: GTLKGYYEKM PDSDLKKLMA DILSVLALTM SAEGERESLK YRLVGSQGEI GSWGHEYVRN LAGEISQEYV KRQSEEASID DLMELVQQIV AFHMKHNAEP
201: EAVDLLMEVE DLDLLVEHVD NTNYKRTCSY LTSSAKYLPG PDDMLVLDIA YTIYMKFEEY PSALVTALYL DNTQYVKQVF TSCDDLLRKK QFCYILARHG
301: QTFELDEEMC AEDEEREGLQ EIINNTKLSE GYLTLARDIE VMEAKTPDDI YKPHLLDGRA SAGASVDSAR QNLASTFVNA FVNAGFGQDK LMTVPSEASS
401: GGASTSWLFK NKEHGKASAA ASLGMILLWD VDSGLAQIDK YFHSTDTHVI AGALLGVGIV NCGIKNECDP ALALLAEYID KEDPSIRIGA IMGLGLAYAG
501: SQNEQIRSKL TPILGDSKAS LDVLAFTAIS LGLVYVGSCN EEIAQAIIFA LMERSESELG EPFARLLPLG LGLLYLGKQE SVEATAEVSK TFNEKIRKHC
601: DMTLLSCAYA GTGNVLKVQH FLGQCAQHFE KGETFQGPAV LGIAMVAMAE ELGLEMAIRS LEHLLQYGEQ NIRRAVPLAL ALLCISNPKV NVMDTLSRLS
701: HDSDSEVAMA AIISLGLIGA GTNNARIAGM LRNLSSYYYK EANLLFCVRI AQGLVHLGKG LLTLSPYHSE HFLLSPTALA GLVTLLHACL DMKAIILGKY
801: HYILYFLTLA MQPRMLLTVD ENLKPLSVPV RVGQAVDVVG QAGRPKTITG FQTHSTPVLL AAGDRAELAT EKYIPLSPIL EGFVILKENP DYRDDQ
101: GTLKGYYEKM PDSDLKKLMA DILSVLALTM SAEGERESLK YRLVGSQGEI GSWGHEYVRN LAGEISQEYV KRQSEEASID DLMELVQQIV AFHMKHNAEP
201: EAVDLLMEVE DLDLLVEHVD NTNYKRTCSY LTSSAKYLPG PDDMLVLDIA YTIYMKFEEY PSALVTALYL DNTQYVKQVF TSCDDLLRKK QFCYILARHG
301: QTFELDEEMC AEDEEREGLQ EIINNTKLSE GYLTLARDIE VMEAKTPDDI YKPHLLDGRA SAGASVDSAR QNLASTFVNA FVNAGFGQDK LMTVPSEASS
401: GGASTSWLFK NKEHGKASAA ASLGMILLWD VDSGLAQIDK YFHSTDTHVI AGALLGVGIV NCGIKNECDP ALALLAEYID KEDPSIRIGA IMGLGLAYAG
501: SQNEQIRSKL TPILGDSKAS LDVLAFTAIS LGLVYVGSCN EEIAQAIIFA LMERSESELG EPFARLLPLG LGLLYLGKQE SVEATAEVSK TFNEKIRKHC
601: DMTLLSCAYA GTGNVLKVQH FLGQCAQHFE KGETFQGPAV LGIAMVAMAE ELGLEMAIRS LEHLLQYGEQ NIRRAVPLAL ALLCISNPKV NVMDTLSRLS
701: HDSDSEVAMA AIISLGLIGA GTNNARIAGM LRNLSSYYYK EANLLFCVRI AQGLVHLGKG LLTLSPYHSE HFLLSPTALA GLVTLLHACL DMKAIILGKY
801: HYILYFLTLA MQPRMLLTVD ENLKPLSVPV RVGQAVDVVG QAGRPKTITG FQTHSTPVLL AAGDRAELAT EKYIPLSPIL EGFVILKENP DYRDDQ
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.