Factsheet for PGSC0003DMT400056260

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008170.2.1	Tomato	cytosol	89.44	79.7
AT4G08140.1	Thale cress	cytosol	27.22	58.33
CDY72396	Canola	cytosol	44.44	55.56
CDX99107	Canola	cytosol	50.56	35.14
CDY33144	Canola	extracellular	51.11	29.39
CDY65736	Canola	extracellular	51.67	22.91
PGSC0003DMT400024306	Potato	cytosol	74.44	14.96
GSMUA_Achr11P...	Banana	cytosol	64.44	13.06
Os02t0146700-02	Rice	plasma membrane	62.78	12.58
EES04513	Sorghum	cytosol	60.0	12.08
TraesCS6D01G105500.1	Wheat	golgi	60.0	12.07
TraesCS6A01G116500.1	Wheat	golgi, unclear	60.0	12.07
HORVU6Hr1G021020.1	Barley	cytosol	60.0	12.03
Zm00001d015259_P001	Maize	cytosol	59.44	12.02
Os06t0699900-01	Rice	plasma membrane	60.0	11.99
TraesCS6B01G144500.1	Wheat	cytosol	60.0	11.95
Zm00001d053881_P001	Maize	mitochondrion, plastid	58.89	11.88
Os09t0326800-01	Rice	plasma membrane	58.33	11.78
TraesCS7D01G413800.1	Wheat	cytosol	35.0	10.16
TraesCS7B01G321900.1	Wheat	cytosol	46.67	9.69
TraesCS7B01G322000.1	Wheat	cytosol	47.22	9.66
TraesCS7A01G421700.1	Wheat	cytosol	46.11	9.43
TraesCS7A01G421600.1	Wheat	mitochondrion	33.33	7.34
KRH30269	Soybean	cytosol	8.33	7.32
TraesCS7D01G413900.1	Wheat	mitochondrion	33.33	7.22
Bra003811.1-P	Field mustard	endoplasmic reticulum	4.44	3.25
HORVU7Hr1G097500.16	Barley	endoplasmic reticulum, golgi, plasma membrane	8.89	2.73
PGSC0003DMT400040763	Potato	cytosol	6.11	1.11
PGSC0003DMT400076219	Potato	endoplasmic reticulum	6.11	1.1
KRH57675	Soybean	cytosol	0.0	0.0
GSMUA_Achr1P10580_001	Banana	cytosol, nucleus, plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400056260	EnsemblPlantsGene:PGSC0003DMG400021858	PANTHER:PTHR10943	PANTHER:PTHR10943:SF8	PGSC:PGSC0003DMG400021858	SEG:seg
UniParc:UPI0002951F7C	UniProt:M1BZ74	MapMan:35.1	:	:	:

Description

26S proteasome regulatory subunit rpn1 [Source:PGSC_GENE;Acc:PGSC0003DMG400021858]

Coordinates

chr10:+:3555509..3560139

Molecular Weight (calculated)

19935.8 Da

IEP (calculated)

6.557

GRAVY (calculated)

-0.606

Length

180 amino acids

Sequence
(BLAST)

001: MSKTPNPNST GPSGYADAGK PAGDEATVKV PSKDSKKKAN KKYEYLSEED LALKQQLELY VERIQDADPG LQKVALESMR QEIQTATISM TVPKPLKFLR
101: PHYGTLKRFY EKMPDSDLKT LLADILSVLA LTMSAEGERE SLKYRVLGTQ GDIGSWGHEY VRNLAGEIGQ EYAKLEVGVP

Best Arabidopsis Sequence Match ( AT2G20580.1 )
(BLAST)

001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

Arabidopsis Description

RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.