CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72396	Canola	cytosol	34.36	61.81
CDY33144	Canola	extracellular	71.43	59.11
AT4G08140.1	Thale cress	cytosol	16.6	51.19
PGSC0003DMT400056260	Potato	cytosol	35.14	50.56
Solyc10g008170.2.1	Tomato	cytosol	34.75	44.55
CDY65736	Canola	extracellular	63.71	40.64
CDX92875	Canola	extracellular	54.83	15.94
CDY29907	Canola	extracellular	54.83	15.94
CDY38389	Canola	cytosol, extracellular	53.28	15.47
CDY35187	Canola	cytosol, extracellular	52.9	15.36
CDY31952	Canola	plasma membrane	48.26	14.6
CDY05774	Canola	cytosol	49.03	14.17
CDX97442	Canola	cytosol	47.49	13.93
CDY14239	Canola	cytosol, extracellular	46.72	13.63
CDY33145	Canola	extracellular	1.16	13.04
GSMUA_Achr11P...	Banana	cytosol	42.86	12.5
TraesCS6D01G105500.1	Wheat	golgi	40.15	11.62
TraesCS6A01G116500.1	Wheat	golgi, unclear	40.15	11.62
Os02t0146700-02	Rice	plasma membrane	40.15	11.58
EES04513	Sorghum	cytosol	39.77	11.52
TraesCS6B01G144500.1	Wheat	cytosol	40.15	11.5
HORVU6Hr1G021020.1	Barley	cytosol	39.77	11.47
Zm00001d015259_P001	Maize	cytosol	39.38	11.46
Zm00001d053881_P001	Maize	mitochondrion, plastid	39.38	11.44
Os06t0699900-01	Rice	plasma membrane	39.38	11.32
Os09t0326800-01	Rice	plasma membrane	37.84	11.0
TraesCS7B01G321900.1	Wheat	cytosol	28.57	8.54
TraesCS7B01G322000.1	Wheat	cytosol	28.57	8.41
TraesCS7A01G421700.1	Wheat	cytosol	28.19	8.3
TraesCS7D01G413800.1	Wheat	cytosol	19.69	8.23
KRH30269	Soybean	cytosol	6.18	7.8
TraesCS7A01G421600.1	Wheat	mitochondrion	20.46	6.49
TraesCS7D01G413900.1	Wheat	mitochondrion	19.3	6.02
HORVU7Hr1G097500.16	Barley	endoplasmic reticulum, golgi, plasma membrane	8.49	3.75
KRH57675	Soybean	cytosol	3.86	3.3
CDY12178	Canola	cytosol	9.27	2.42
CDX79472	Canola	cytosol, plastid	9.27	2.4
CDY19162	Canola	extracellular	9.27	2.39
CDX84724	Canola	cytosol, plastid	9.27	2.39
CDY23791	Canola	cytosol, plastid	9.27	2.38
CDY60623	Canola	endoplasmic reticulum, golgi	8.11	2.17
GSMUA_Achr1P10580_001	Banana	cytosol, nucleus, plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDX99107	EnsemblPlantsGene:GSBRNA2T00107259001	ncoils:Coil	PANTHER:PTHR10943	PANTHER:PTHR10943:SF8	ProteinID:CDX99107
ProteinID:CDX99107.1	SEG:seg	UniParc:UPI0004EE23CC	MapMan:35.1	:	:

Description

BnaA06g17980D

Coordinates

chrLK031908:+:393451..395266

Molecular Weight (calculated)

29094.8 Da

IEP (calculated)

8.961

GRAVY (calculated)

-0.824

Length

259 amino acids

Sequence
(BLAST)

001: MASGPDPNSF GDGAKRDEAT TKVPSKDPKK KDDKKEEDLS EEDLQLKQNL ELYVESVQDP NLELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KEFHKNMVES DLKESLGYML TGSEGDIGSW GHEYVRNLAG EIAEEYTVRQ VRKQLFMSSL CLAFLCRGAS VRTLGQNIGA KDTASRRLPE NFSVEVILDL
201: DEATVKEMRK QEEIAKAKLA MESKKKLAEK AAAKAAIRAQ KEAEKKEQKE REKAVKKKT

Best Arabidopsis Sequence Match ( AT2G20580.1 )
(BLAST)

001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

Arabidopsis Description

RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.