Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14239 | Canola | cytosol, extracellular | 91.05 | 90.54 |
| CDY29907 | Canola | extracellular | 84.48 | 83.73 |
| CDX92875 | Canola | extracellular | 84.26 | 83.5 |
| CDY35187 | Canola | cytosol, extracellular | 84.03 | 83.18 |
| CDY38389 | Canola | cytosol, extracellular | 83.92 | 83.07 |
| AT4G28470.1 | Thale cress | cytosol | 82.56 | 81.82 |
| CDY05774 | Canola | cytosol | 80.41 | 79.24 |
| CDY31952 | Canola | plasma membrane | 74.86 | 77.22 |
| Solyc07g053650.2.1 | Tomato | nucleus | 69.88 | 75.06 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 74.63 | 74.04 |
| PGSC0003DMT400024306 | Potato | cytosol | 74.63 | 73.55 |
| GSMUA_Achr11P... | Banana | cytosol | 68.63 | 68.24 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 68.4 | 67.49 |
| TraesCS6D01G105500.1 | Wheat | golgi | 68.4 | 67.49 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 68.29 | 67.15 |
| Os02t0146700-02 | Rice | plasma membrane | 68.29 | 67.15 |
| Zm00001d015259_P001 | Maize | cytosol | 67.38 | 66.85 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 67.38 | 66.7 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 68.29 | 66.7 |
| EES04513 | Sorghum | cytosol | 67.38 | 66.55 |
| Os09t0326800-01 | Rice | plasma membrane | 66.36 | 65.77 |
| Os06t0699900-01 | Rice | plasma membrane | 66.82 | 65.48 |
| Solyc10g008180.1.1 | Tomato | plastid | 53.45 | 64.57 |
| CDY72396 | Canola | cytosol | 9.85 | 60.42 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 19.93 | 60.27 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 53.68 | 58.02 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 56.74 | 57.79 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 56.63 | 56.82 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 53.45 | 56.8 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 56.17 | 56.36 |
| TraesCS7D01G413800.1 | Wheat | cytosol | 36.01 | 51.29 |
| CDX99107 | Canola | cytosol | 13.93 | 47.49 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 29.33 | 44.2 |
| CDY33144 | Canola | extracellular | 14.38 | 40.58 |
| CDY65736 | Canola | extracellular | 15.18 | 33.0 |
| CDY33145 | Canola | extracellular | 0.68 | 26.09 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 2.83 | 17.24 |
| CDY60623 | Canola | endoplasmic reticulum, golgi | 14.84 | 13.52 |
| CDY12178 | Canola | cytosol | 15.18 | 13.51 |
| CDY19162 | Canola | extracellular | 14.95 | 13.15 |
| CDY23791 | Canola | cytosol, plastid | 14.95 | 13.1 |
| CDX84724 | Canola | cytosol, plastid | 14.84 | 13.03 |
| CDX79472 | Canola | cytosol, plastid | 14.72 | 13.01 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | GO:A0A078E8S7 | InterPro:ARM-like | InterPro:ARM-type_fold |
| EnsemblPlants:CDX97442 | ProteinID:CDX97442 | ProteinID:CDX97442.1 | ncoils:Coil | GO:GO:0000502 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0042176 | EnsemblPlantsGene:GSBRNA2T00104602001 | InterPro:IPR011989 |
| PFAM:PF01851 | PIRSF:PIRSF015965 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt | SUPFAM:SSF48371 |
| UniParc:UPI0004EB7172 | SEG:seg | : | : | : | : |
Description
BnaC08g13070D
Coordinates
chrLK031899:-:682993..687911
Molecular Weight (calculated)
97483.1 Da
IEP (calculated)
4.979
GRAVY (calculated)
-0.057
Length
883 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPVPDPNSV GGGGAKRDEA TTKVKPPKKK EEDLSEEDLE LKQNLELYVK RVQDPNPESQ KAALESMSQE IRASTSSMTS VPMPLKFLRP HYGPLKDCHL
101: KMEESDLKKL LADILSVLAL TMSAEGERES LGYRLTGSGG DIGSWGHEYV RNLAGEVAVE YTIRQVQESS MMDLMDLVRQ IVAFHMKHNA ETEAVDLLME
201: VEDLDLLLDH VGRTNFRRTC NYLTSATRYR PWPDDMVALD IAYMIYMKFK AYPNALQIAL LLDNMQYVKK VFTSCTNLLR KKQFCYMISR HGITFNLDPE
301: MVEDEVDRST LQEIVNNTKL NEGYLTLARD IDVMEAKRPE DIYKDHFLRA NPGPVADSAR QNLAATFVNA FVNAGFCKDK LMTVPLDSTS GSDGNWIFKN
401: KDDGKTSASA SLGMISLWNV EALDELDKYY TSSDKRVRAG ALLSVGILNC GIKSDFDPAL ALLEEYIDNE DSSVRICAIM GIGIAYAGSQ KDQIKSSLSP
501: ILNDIKAPLD VVAFAALSLG MVYVGSCSDE VAQSIMFALM DRNSAELGEA LVRFLPLGLG LLYLGKQESV EATAEISKTL CEKIRKCCEM TLLSCAYAGT
601: GNVLKVQELL DQCGEHLEKD NIHQGPAVLG VAIVAMSEEL GRDMAIRSLE HVLQYGELNI RRAVPLALAL LCISNPKMNV MDTLSRLSHD TDSEVAMAAI
701: ISLGLIGAGT NNARIAGMLR NLSSFYEKDA SLLFCVRIAQ GLLHMGKGLL TLNPFHSDRV LLSPTALAGI MTLLHACLDM KSIILGEYHY VLYFLALAMQ
801: PRMMLTVDEN LKPISVPVRV GQAVDVVGQA GRPRTITGFQ TYETPVLLAA GERAELATDK YIPLSPVLEG FVILRENPNY REE
101: KMEESDLKKL LADILSVLAL TMSAEGERES LGYRLTGSGG DIGSWGHEYV RNLAGEVAVE YTIRQVQESS MMDLMDLVRQ IVAFHMKHNA ETEAVDLLME
201: VEDLDLLLDH VGRTNFRRTC NYLTSATRYR PWPDDMVALD IAYMIYMKFK AYPNALQIAL LLDNMQYVKK VFTSCTNLLR KKQFCYMISR HGITFNLDPE
301: MVEDEVDRST LQEIVNNTKL NEGYLTLARD IDVMEAKRPE DIYKDHFLRA NPGPVADSAR QNLAATFVNA FVNAGFCKDK LMTVPLDSTS GSDGNWIFKN
401: KDDGKTSASA SLGMISLWNV EALDELDKYY TSSDKRVRAG ALLSVGILNC GIKSDFDPAL ALLEEYIDNE DSSVRICAIM GIGIAYAGSQ KDQIKSSLSP
501: ILNDIKAPLD VVAFAALSLG MVYVGSCSDE VAQSIMFALM DRNSAELGEA LVRFLPLGLG LLYLGKQESV EATAEISKTL CEKIRKCCEM TLLSCAYAGT
601: GNVLKVQELL DQCGEHLEKD NIHQGPAVLG VAIVAMSEEL GRDMAIRSLE HVLQYGELNI RRAVPLALAL LCISNPKMNV MDTLSRLSHD TDSEVAMAAI
701: ISLGLIGAGT NNARIAGMLR NLSSFYEKDA SLLFCVRIAQ GLLHMGKGLL TLNPFHSDRV LLSPTALAGI MTLLHACLDM KSIILGEYHY VLYFLALAMQ
801: PRMMLTVDEN LKPISVPVRV GQAVDVVGQA GRPRTITGFQ TYETPVLLAA GERAELATDK YIPLSPVLEG FVILRENPNY REE
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.