CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87942
EER88603
EER88627
EER90506
EER91045
EER91182
EER92639
EER92751
EER99181
EER99961
EES01052
EES01223
EES04403
EES04466
EES04513
EES06471
EES07646
EES07793
EES10115
EES11600
EES13525
EES13543
EES14113
EES15319
EES17355
KXG19738
KXG26586
KXG27072
KXG31298
KXG35597
KXG36677
KXG39890
KXG40336
OQU75904
OQU77597
OQU81472
OQU81648
OQU82238
OQU85258
OQU89746
OQU93221

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20580.1	EES13543	AT1G04810.1	20706207
AT2G20580.1	KXG27072	AT1G04810.1	20706207
AT2G20580.1	EES14113	AT1G20200.1	20706207
AT2G20580.1	EES17355	AT1G29150.1	20706207
AT2G20580.1	OQU81648	AT1G29150.1	20706207
AT2G20580.1	EER88627	AT1G45000.1	20706207
AT2G20580.1	EES06471	AT1G45000.1	20706207
AT2G20580.1	EES01052	AT1G51650.1	20706207
AT2G20580.1	EES01223	AT1G53750.1	20706207
AT2G20580.1	EES07646	AT1G53750.1	20706207
AT2G20580.1	EES13525	AT1G64520.1	20706207
AT2G20580.1	EER99961	AT2G20140.1	20706207
AT2G20580.1	EES13543	AT2G32730.1	20706207
AT2G20580.1	KXG27072	AT2G32730.1	20706207
AT2G20580.1	KXG19738	AT3G02540.1	21798944
AT2G20580.1	KXG35597	AT3G02540.1	21798944
AT2G20580.1	EER87942	AT3G05530.1	20706207
AT2G20580.1	KXG31298	AT3G05530.1	20706207
AT2G20580.1	EES11600	AT3G11270.1	20706207
AT2G20580.1	EES04403	AT3G48750.1	20706207
AT2G20580.1	KXG40336	AT3G48750.1	20706207
AT2G20580.1	EER92639	AT4G16390.1	20706207
AT2G20580.1	KXG26586	AT4G24820.1	20706207
AT2G20580.1	OQU85258	AT4G24820.1	20706207
AT2G20580.1	EES11600	AT5G05780.1	20706207
AT2G20580.1	EER88603	AT5G20000.1	20706207
AT2G20580.1	OQU82238	AT5G45620.1	20706207
AT2G20580.1	EER91182	AT5G58290.1	20706207
AT2G20580.1	KXG39890	AT5G58290.1	20706207
AT4G28470.1	EES13543	AT1G04810.1	14623884
AT4G28470.1	KXG27072	AT1G04810.1	14623884
AT4G28470.1	EES14113	AT1G20200.1	14623884
AT4G28470.1	EES17355	AT1G29150.1	14623884
AT4G28470.1	OQU81648	AT1G29150.1	14623884
AT4G28470.1	EER88627	AT1G45000.1	14623884
AT4G28470.1	EES06471	AT1G45000.1	14623884
AT4G28470.1	EES01223	AT1G53750.1	14623884
AT4G28470.1	EES07646	AT1G53750.1	14623884
AT4G28470.1	EES10115	AT1G53850.1	14623884
AT4G28470.1	OQU93221	AT1G53850.1	14623884
AT4G28470.1	EER99181	AT1G56450.1	14623884
AT4G28470.1	EES13525	AT1G64520.1	14623884
AT4G28470.1	EES14113	AT1G75990.1	14623884
AT4G28470.1	EER92751	AT2G05840.1	14623884
AT4G28470.1	KXG36677	AT2G05840.1	14623884
AT4G28470.1	EES04513	AT2G20580.1	14623884
AT4G28470.1	EES13543	AT2G32730.1	14623884
AT4G28470.1	KXG27072	AT2G32730.1	14623884
AT4G28470.1	EER87942	AT3G05530.1	14623884
AT4G28470.1	KXG31298	AT3G05530.1	14623884
AT4G28470.1	EES10115	AT3G14290.1	14623884
AT4G28470.1	OQU93221	AT3G14290.1	14623884
AT4G28470.1	OQU75904	AT3G22110.1	14623884
AT4G28470.1	EER91045	AT3G22630.1	14623884
AT4G28470.1	EES15319	AT3G60820.1	14623884
AT4G28470.1	OQU89746	AT3G60820.1	14623884
AT4G28470.1	KXG26586	AT4G24820.1	14623884
AT4G28470.1	OQU85258	AT4G24820.1	14623884
AT4G28470.1	EES04513	AT4G28470.1	14623884
AT4G28470.1	EER99961	AT4G29040.1	14623884
AT4G28470.1	EES11600	AT5G05780.1	14623884
AT4G28470.1	EER88603	AT5G19990.1	14623884
AT4G28470.1	EER88603	AT5G20000.1	14623884
AT4G28470.1	EER92751	AT5G35590.1	14623884
AT4G28470.1	KXG36677	AT5G35590.1	14623884
AT4G28470.1	EES04466	AT5G42790.1	14623884
AT4G28470.1	OQU82238	AT5G45620.1	14623884
AT4G28470.1	EER91182	AT5G58290.1	14623884
AT4G28470.1	KXG39890	AT5G58290.1	14623884
AT4G28470.1	EER90506	AT5G64760.1	14623884
AT4G28470.1	EES07793	AT5G64760.1	14623884
AT4G28470.1	OQU77597	AT5G64760.1	14623884
AT4G28470.1	OQU81472	AT5G64760.1	14623884

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053881_P001	Maize	mitochondrion, plastid	98.55	98.77
Zm00001d015259_P001	Maize	cytosol	97.76	98.2
Os02t0146700-02	Rice	plasma membrane	93.51	93.1
TraesCS6A01G116500.1	Wheat	golgi, unclear	92.51	92.4
TraesCS6D01G105500.1	Wheat	golgi	92.39	92.29
HORVU6Hr1G021020.1	Barley	cytosol	92.17	91.76
TraesCS6B01G144500.1	Wheat	cytosol	92.28	91.26
GSMUA_Achr11P...	Banana	cytosol	82.44	83.0
Solyc07g053650.2.1	Tomato	nucleus	72.6	78.95
KRH55899	Soybean	endoplasmic reticulum, nucleus	76.62	77.4
VIT_12s0028g03130.t01	Wine grape	cytosol	76.85	77.19
KRH25643	Soybean	endoplasmic reticulum, nucleus	76.29	77.06
PGSC0003DMT400024306	Potato	cytosol	77.07	76.9
AT2G20580.1	Thale cress	cytosol	73.27	73.51
CDY35187	Canola	cytosol, extracellular	72.93	73.09
CDY38389	Canola	cytosol, extracellular	72.93	73.09
Bra011030.1-P	Field mustard	cytosol	72.82	73.06
Bra024200.1-P	Field mustard	cytosol	72.48	72.73
CDY29907	Canola	extracellular	72.37	72.61
CDX92875	Canola	extracellular	72.37	72.61
AT4G28470.1	Thale cress	cytosol	72.15	72.39
CDY05774	Canola	cytosol	72.48	72.32
CDY31952	Canola	plasma membrane	67.79	70.79
Bra036488.1-P	Field mustard	cytosol, extracellular, plasma membrane	65.1	69.87
CDX97442	Canola	cytosol	66.55	67.38
Bra010366.1-P	Field mustard	cytosol	66.67	67.27
Solyc10g008180.1.1	Tomato	plastid	54.81	67.03
CDY14239	Canola	cytosol, extracellular	66.55	67.0
KRH57774	Soybean	endoplasmic reticulum, plasma membrane	20.69	63.36
AT4G08140.1	Thale cress	cytosol	5.93	63.1
PGSC0003DMT400056260	Potato	cytosol	12.08	60.0
KRH57675	Soybean	cytosol	19.46	57.43
Solyc10g008170.2.1	Tomato	cytosol	12.86	56.93
CDY72396	Canola	cytosol	8.28	51.39
CDX99107	Canola	cytosol	11.52	39.77
KRH30269	Soybean	cytosol	9.06	39.51
CDY33144	Canola	extracellular	12.19	34.82
CDY65736	Canola	extracellular	13.2	29.06
GSMUA_Achr1P10580_001	Banana	cytosol, nucleus, plasma membrane	3.36	20.69
Bra003811.1-P	Field mustard	endoplasmic reticulum	4.59	16.67
EES13543	Sorghum	endoplasmic reticulum	16.44	14.88
KXG27072	Sorghum	plasma membrane	16.67	14.78

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.6.2.2.1	InterPro:26S_Psome_Rpn1	EntrezGene:8069964	InterPro:ARM-like	InterPro:ARM-type_fold
UniProt:C5XUM4	EnsemblPlants:EES04513	ProteinID:EES04513	ProteinID:EES04513.1	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004175	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0030234
GO:GO:0034515	GO:GO:0042176	GO:GO:0043161	GO:GO:0050790	InterPro:IPR011989	PFAM:PF01851
PIRSF:PIRSF015965	PANTHER:PTHR10943	PANTHER:PTHR10943:SF8	InterPro:Proteasome/cyclosome_rpt	EnsemblPlantsGene:SORBI_3004G039600	SUPFAM:SSF48371
unigene:Sbi.3292	UniParc:UPI0001A85473	RefSeq:XP_002451537.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:3257541..3265877

Molecular Weight (calculated)

97267.5 Da

IEP (calculated)

4.876

GRAVY (calculated)

-0.013

Length

894 amino acids

Sequence
(BLAST)

001: MAPPENPSPA APAEPSQPPP PAAAAAKGKG KKKDEKKDDD LSEEDLALKE QLELYVVRAQ DADPGVQKLA LESMRQEIRS ATSSMTSVPK PLKFLRPHFG
101: TLKSYFETMP ESELKKYMAD ILSVLALTMS IEGERESLKY RLLGSEGDIG SWGHEYVRNL AGEIAQEFQK RQDDDLPIDA LMELVQQIVS FHMKHNAEPE
201: AVDLLMEVED LDLLVEHVDA TNYKRACLYL TSSSNFLPAP DDSLALDIAY TIYMKFGDLA SALRTSLKLE KSPQYVKQVY TATDDLLLKK QFSYLIARHG
301: LVMEIDDEIA ADDNDKEVLQ EIVNNTKLSE GYLTLARDIE VMEPKSPEDI YKVHLIDGRG ASSSLDSARQ NLAATFVNAF VNAGFGQDKL MTAPSDSSSS
401: GSSGNWLFKN KEHGKASAAA SLGMILLWDT DSGLAQLDKY LHSNDTHVVA GALLGIGIVT CGVKSDCDPA FAILMEYIGK DDSNIRIGAI LGLGIAYAGS
501: QKEELKMHLS AVLGDSQSPL EVLVFSAIAL GLVFVGSCNE EIAQSIIFAL MERSEAELAE PIIRLLPVAL GLLYLGKQDS VEATAEVSKT FDEKIGKYCD
601: VTLMSLAYAG TGNVLKVQKL LGICSQHLEK GETHQGPAVL GIALIAMAEE LGAEMAVRSL ERLLQYGEQN IRRAVPLALG ILCISNPKVN VMDTLSRLSH
701: DADADVSMAA IISLGLIGAG TNNARIAGML RNLSSYYYKE AAHLFCVRIA QGLVHLGKGL LTLSPYHSDR FLLSPMALGG LVTVLHACLD MKSTILGKYH
801: YILYIIVLAM QPRMLLTVDE DLKPLSVPVR VGQAVDVVGQ AGRPKTITGF QTHSTPVLLA AGERAELATE KYIPLTPVLE GFVILKKNPE YHEE

Best Arabidopsis Sequence Match ( AT2G20580.1 )
(BLAST)

001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

Arabidopsis Description

RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.