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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
EER92569
EES04513

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d037326_P001 Maize cytosol 91.67 93.03
TraesCS7D01G209100.1 Wheat cytosol 74.02 74.2
Os06t0264300-01 Rice cytosol, nucleus, plastid 74.75 73.85
TraesCS7B01G113500.1 Wheat cytosol 73.04 73.22
TraesCS7A01G206300.1 Wheat cytosol 70.34 70.34
GSMUA_Achr9P15580_001 Banana cytosol 36.76 67.87
Solyc02g063130.2.1 Tomato cytosol, extracellular 60.78 64.75
HORVU7Hr1G042100.8 Barley cytosol 65.2 63.33
VIT_01s0011g03410.t01 Wine grape cytosol 60.54 62.22
Solyc02g085840.2.1 Tomato cytosol 59.31 62.21
KRH75377 Soybean cytosol, nucleus 59.56 61.99
PGSC0003DMT400062159 Potato cytosol 58.33 61.66
Bra028184.1-P Field mustard cytosol 57.11 61.64
CDX74522 Canola cytosol 57.35 61.58
CDY58121 Canola cytosol 57.84 61.46
CDY01661 Canola cytosol 56.86 61.38
PGSC0003DMT400032941 Potato cytosol 58.58 61.28
Bra028408.1-P Field mustard cytosol 57.35 61.26
GSMUA_Achr5P05860_001 Banana cytosol 58.82 61.22
AT5G38470.1 Thale cress cytosol 56.37 60.85
CDX67404 Canola cytosol 56.62 60.47
VIT_14s0006g03040.t01 Wine grape cytosol 56.37 60.37
KRG90804 Soybean cytosol 59.31 60.2
GSMUA_Achr3P07380_001 Banana cytosol 60.05 59.9
KRH45279 Soybean cytosol 58.58 59.6
Solyc04g007120.2.1 Tomato cytosol, plastid 58.09 57.95
Bra001050.1-P Field mustard cytosol 56.37 57.36
KRH35965 Soybean cytosol 57.11 57.11
CDX74251 Canola cytosol 56.13 57.11
KXG35597 Sorghum cytosol 55.64 57.04
AT3G02540.1 Thale cress cytosol 57.84 56.32
CDX91998 Canola cytosol 54.17 54.84
KRH01763 Soybean cytosol 47.06 51.2
AT5G16090.1 Thale cress cytosol 21.32 50.88
EES04633 Sorghum cytosol 42.16 46.61
CDY26493 Canola cytosol 31.37 36.06
Bra008649.1-P Field mustard cytosol 30.39 36.05
CDX69474 Canola cytosol 32.11 35.89
CDY26494 Canola nucleus 22.79 34.57
CDY26496 Canola cytosol 29.17 33.15
CDX69472 Canola cytosol 26.96 30.99
Bra008647.1-P Field mustard cytosol 26.96 30.99
CDY26495 Canola cytosol 12.5 26.84
Bra008648.1-P Field mustard cytosol 28.92 18.82
CDX69473 Canola cytosol 28.68 17.75
Protein Annotations
Gene3D:1.10.10.540Gene3D:1.10.8.10MapMan:19.2.4.4.1Gene3D:3.10.20.90UniProt:A0A194YIG2GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003684GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006259GO:GO:0006289
GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0019538
GO:GO:0043161InterPro:IPR000626InterPro:IPR015940InterPro:IPR036353EnsemblPlants:KXG19738ProteinID:KXG19738
ProteinID:KXG19738.1PFAM:PF00240PFAM:PF00627PFAM:PF09280PRINTS:PR01839PFscan:PS50030
PFscan:PS50053PANTHER:PTHR10621PANTHER:PTHR10621:SF8InterPro:Rad23SMART:SM00165SMART:SM00213
SMART:SM00727EnsemblPlantsGene:SORBI_3010G108900SUPFAM:SSF101238SUPFAM:SSF46934SUPFAM:SSF54236InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601InterPro:UBAInterPro:UBA-like_sfUniParc:UPI0001FCCB13InterPro:Ubiquitin-like_domsfInterPro:Ubiquitin_dom
InterPro:XPC-bdInterPro:XPC-bd_sfSEG:seg:::
Description
hypothetical protein
Coordinates
chr10:+:10846892..10853159
Molecular Weight (calculated)
42622.2 Da
IEP (calculated)
4.319
GRAVY (calculated)
-0.264
Length
408 amino acids
Sequence
(BLAST)
001: MKLNVKTLKG TNFEIEASPD ASVAEVKRII ETTQGQSTYP ADQQMLIYQG KILKDETTLE GNGVAENSFL VIMLSKAKAS SSGASTATAA KAPATPAQPA
101: APVAPVAPAT SVARAPTQAP VATAETTPPS AQPQAAPAAT VAASGDADVY SQAASNLVSG NNLEQTIQQI LDMGGGTWER DTVVRALRAA YNNPERAIDY
201: LYSGIPENVE APPVARAPAA GQQTNQQAPS PAQPAVAPPV QPSAASAGPN ANPLNLFPQG VPSGGANPGV VPGAGSGALD ALRQLPQFQA LLQLVQANPQ
301: ILQPMLQELG KQNPQILRLI QENQAEFLRL VNETPEGGPG GNILGQLAAA MPQTLTVTPE EREAIQRLEG MGFNRELVLE VFFACNKDEE LAANYLLDHG
401: HEFDEQQQ
Best Arabidopsis Sequence Match ( AT5G38470.1 )
(BLAST)
001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
Arabidopsis Description
RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.