Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G02540.1 | EES04513 | AT2G20580.1 | 21798944 |
AT3G02540.1 | EER92569 | AT4G38630.1 | 20059542 |
AT5G38470.1 | EER92569 | AT4G38630.1 | 20059542 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d037326_P001 | Maize | cytosol | 91.67 | 93.03 |
TraesCS7D01G209100.1 | Wheat | cytosol | 74.02 | 74.2 |
Os06t0264300-01 | Rice | cytosol, nucleus, plastid | 74.75 | 73.85 |
TraesCS7B01G113500.1 | Wheat | cytosol | 73.04 | 73.22 |
TraesCS7A01G206300.1 | Wheat | cytosol | 70.34 | 70.34 |
GSMUA_Achr9P15580_001 | Banana | cytosol | 36.76 | 67.87 |
Solyc02g063130.2.1 | Tomato | cytosol, extracellular | 60.78 | 64.75 |
HORVU7Hr1G042100.8 | Barley | cytosol | 65.2 | 63.33 |
VIT_01s0011g03410.t01 | Wine grape | cytosol | 60.54 | 62.22 |
Solyc02g085840.2.1 | Tomato | cytosol | 59.31 | 62.21 |
KRH75377 | Soybean | cytosol, nucleus | 59.56 | 61.99 |
PGSC0003DMT400062159 | Potato | cytosol | 58.33 | 61.66 |
Bra028184.1-P | Field mustard | cytosol | 57.11 | 61.64 |
CDX74522 | Canola | cytosol | 57.35 | 61.58 |
CDY58121 | Canola | cytosol | 57.84 | 61.46 |
CDY01661 | Canola | cytosol | 56.86 | 61.38 |
PGSC0003DMT400032941 | Potato | cytosol | 58.58 | 61.28 |
Bra028408.1-P | Field mustard | cytosol | 57.35 | 61.26 |
GSMUA_Achr5P05860_001 | Banana | cytosol | 58.82 | 61.22 |
AT5G38470.1 | Thale cress | cytosol | 56.37 | 60.85 |
CDX67404 | Canola | cytosol | 56.62 | 60.47 |
VIT_14s0006g03040.t01 | Wine grape | cytosol | 56.37 | 60.37 |
KRG90804 | Soybean | cytosol | 59.31 | 60.2 |
GSMUA_Achr3P07380_001 | Banana | cytosol | 60.05 | 59.9 |
KRH45279 | Soybean | cytosol | 58.58 | 59.6 |
Solyc04g007120.2.1 | Tomato | cytosol, plastid | 58.09 | 57.95 |
Bra001050.1-P | Field mustard | cytosol | 56.37 | 57.36 |
KRH35965 | Soybean | cytosol | 57.11 | 57.11 |
CDX74251 | Canola | cytosol | 56.13 | 57.11 |
KXG35597 | Sorghum | cytosol | 55.64 | 57.04 |
AT3G02540.1 | Thale cress | cytosol | 57.84 | 56.32 |
CDX91998 | Canola | cytosol | 54.17 | 54.84 |
KRH01763 | Soybean | cytosol | 47.06 | 51.2 |
AT5G16090.1 | Thale cress | cytosol | 21.32 | 50.88 |
EES04633 | Sorghum | cytosol | 42.16 | 46.61 |
CDY26493 | Canola | cytosol | 31.37 | 36.06 |
Bra008649.1-P | Field mustard | cytosol | 30.39 | 36.05 |
CDX69474 | Canola | cytosol | 32.11 | 35.89 |
CDY26494 | Canola | nucleus | 22.79 | 34.57 |
CDY26496 | Canola | cytosol | 29.17 | 33.15 |
CDX69472 | Canola | cytosol | 26.96 | 30.99 |
Bra008647.1-P | Field mustard | cytosol | 26.96 | 30.99 |
CDY26495 | Canola | cytosol | 12.5 | 26.84 |
Bra008648.1-P | Field mustard | cytosol | 28.92 | 18.82 |
CDX69473 | Canola | cytosol | 28.68 | 17.75 |
Protein Annotations
Gene3D:1.10.10.540 | Gene3D:1.10.8.10 | MapMan:19.2.4.4.1 | Gene3D:3.10.20.90 | UniProt:A0A194YIG2 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006289 |
GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
GO:GO:0043161 | InterPro:IPR000626 | InterPro:IPR015940 | InterPro:IPR036353 | EnsemblPlants:KXG19738 | ProteinID:KXG19738 |
ProteinID:KXG19738.1 | PFAM:PF00240 | PFAM:PF00627 | PFAM:PF09280 | PRINTS:PR01839 | PFscan:PS50030 |
PFscan:PS50053 | PANTHER:PTHR10621 | PANTHER:PTHR10621:SF8 | InterPro:Rad23 | SMART:SM00165 | SMART:SM00213 |
SMART:SM00727 | EnsemblPlantsGene:SORBI_3010G108900 | SUPFAM:SSF101238 | SUPFAM:SSF46934 | SUPFAM:SSF54236 | InterPro:STI1_HS-bd |
TIGRFAMs:TIGR00601 | InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI0001FCCB13 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom |
InterPro:XPC-bd | InterPro:XPC-bd_sf | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:10846892..10853159
Molecular Weight (calculated)
42622.2 Da
IEP (calculated)
4.319
GRAVY (calculated)
-0.264
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLNVKTLKG TNFEIEASPD ASVAEVKRII ETTQGQSTYP ADQQMLIYQG KILKDETTLE GNGVAENSFL VIMLSKAKAS SSGASTATAA KAPATPAQPA
101: APVAPVAPAT SVARAPTQAP VATAETTPPS AQPQAAPAAT VAASGDADVY SQAASNLVSG NNLEQTIQQI LDMGGGTWER DTVVRALRAA YNNPERAIDY
201: LYSGIPENVE APPVARAPAA GQQTNQQAPS PAQPAVAPPV QPSAASAGPN ANPLNLFPQG VPSGGANPGV VPGAGSGALD ALRQLPQFQA LLQLVQANPQ
301: ILQPMLQELG KQNPQILRLI QENQAEFLRL VNETPEGGPG GNILGQLAAA MPQTLTVTPE EREAIQRLEG MGFNRELVLE VFFACNKDEE LAANYLLDHG
401: HEFDEQQQ
101: APVAPVAPAT SVARAPTQAP VATAETTPPS AQPQAAPAAT VAASGDADVY SQAASNLVSG NNLEQTIQQI LDMGGGTWER DTVVRALRAA YNNPERAIDY
201: LYSGIPENVE APPVARAPAA GQQTNQQAPS PAQPAVAPPV QPSAASAGPN ANPLNLFPQG VPSGGANPGV VPGAGSGALD ALRQLPQFQA LLQLVQANPQ
301: ILQPMLQELG KQNPQILRLI QENQAEFLRL VNETPEGGPG GNILGQLAAA MPQTLTVTPE EREAIQRLEG MGFNRELVLE VFFACNKDEE LAANYLLDHG
401: HEFDEQQQ
001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
Arabidopsis Description
RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.